Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326C10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p... 29 0.32
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 29 0.42
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ... 27 2.2
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 5.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 5.2
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 25 5.2
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 25 6.8
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 25 6.8
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 6.8
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 25 6.8
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 6.8
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 6.8
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 6.8
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ... 25 9.0
>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 111
Score = 29.5 bits (63), Expect = 0.32
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 257 QSFQWL*SALVVEPLPQPHPHR 322
QS++W+ S+ +V+ LP+ HP R
Sbjct: 52 QSYKWIVSSTLVQKLPEDHPSR 73
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 29.1 bits (62), Expect = 0.42
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -1
Query: 494 KESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTI 369
K SPP N+ A+KPVP+ N S +L +SP N K ++
Sbjct: 188 KNSPP--NSRTARKPVPRRAN-SASHNLGSTKSPNGNAKESL 226
>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 384 ILGRRLEKG*VNRRLGILSFWYWFFGCSIVVGRWRLFL 497
IL RR++ + L ILSF W F +V WRLF+
Sbjct: 2 ILNRRIQV--ILPTLLILSFIIWIFHSVMVDKDWRLFM 37
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 463 QPKNQYQKLRIPSLLLTYPFSN 398
QP NQ+Q ++PS L T P S+
Sbjct: 263 QPSNQFQTQKLPSGLDTRPVSS 284
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 441 FWYWFFGCSIVVGRWRLFL 497
F WFFGC+++ G +LFL
Sbjct: 1950 FMCWFFGCTLISGP-QLFL 1967
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 497 QKESPPANNNTAAKKPVPKAENPQPSVDL-SFFQSPPQNLKRTI 369
++ + P ++ + P P AEN QPSV +SP +L + I
Sbjct: 321 KEPAKPVPQPSSNEPPAPSAENKQPSVSSPEKKESPATHLLKVI 364
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 146 KKLQKVLD-WLTHIFLQRQVWSRSWR 220
KK+ KV++ W T I Q + R+WR
Sbjct: 364 KKVVKVIEVWKTWIAFQEETLERAWR 389
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -1
Query: 446 PKAENPQPSVDLSFFQSPPQNL 381
P+ + PQP++ L+ + +PP++L
Sbjct: 500 PEGDLPQPNIYLTRYTNPPKSL 521
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 260 SFQWL*SALVVEPLP-QPHPHRLIPGSPVFQFHARLPQWFFLNFGAEIGKRISQQ 421
S Q++ S L+ P QP +L+ G P+ Q + + +FG + K +++
Sbjct: 568 SSQYVSSILMCAPYASQPVTLKLVGGKPISQLYIDMTIAMMASFGVNVTKSTTEE 622
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = -1
Query: 506 KIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIE 366
K+ + P N N K P + N P + ++ SP +++ E
Sbjct: 174 KLTSNVAYPPNYNNYLKSPYQQPTNFPPEIQYNYSHSPQHSIQEAEE 220
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 104 NISSRHGDDHSFDFSLH 54
N+S G +HS DFSLH
Sbjct: 471 NLSKTSGMNHSADFSLH 487
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 6.8
Identities = 22/107 (20%), Positives = 43/107 (40%)
Frame = -1
Query: 521 ADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIEK 342
A S K++ K ++++++ P +NP + +S P+N + E+ K
Sbjct: 303 AASFPKVVPKNEISVHHDSSSSNVSPIYKNPVAEQSDTPTRSLPKNYAYVAKSTSPEL-K 361
Query: 341 QVILXXXXXXXXXXVALPPKPTITIESSDEDELEVIQSPSPAKILTK 201
PP PTI +++ D L++ P ++ L K
Sbjct: 362 VFDTVMPVALSPKPAQKPPSPTIHTKAALADILDIFNQPLRSESLEK 408
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 8 FFSFSMEWPDQVGLDRVG*NQNYDHLRVSRRCLMLCNLHG*THLTQKKLQKVLDWLTHIF 187
+F ++ V +DRV N+ ++ ++ C+ + L T+K KVL+WL F
Sbjct: 64 YFEKTLLGEQSVQVDRVLLNRT-ENEKIDLECVQILRLLA-PFFTEKNALKVLEWLIRRF 121
>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 201
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 521 ADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLS 408
+DS++ + +E+ + + A K +PK P PS DL+
Sbjct: 157 SDSSSDV-DEETLIVSKSKKAHKDIPKFSAPPPSADLN 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,909
Number of Sequences: 5004
Number of extensions: 45891
Number of successful extensions: 155
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -