Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326C10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 33 0.11
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 30 0.98
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316... 30 1.3
09_06_0053 - 20537433-20537833,20537910-20538456 29 1.7
01_01_0981 + 7766025-7766753 29 1.7
05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238 29 2.3
06_03_1037 - 27058002-27058082,27058856-27059041,27060033-270601... 28 4.0
05_01_0210 + 1583176-1584177 28 4.0
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 28 4.0
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 27 9.1
01_06_0802 + 32087661-32087965,32088106-32088220,32088302-320884... 27 9.1
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 509 TKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVI 360
TK IQK P T A+ P+P+A P+ S+ ++ Q+P L + I
Sbjct: 147 TKDIQKPDEPQPGETQAESPLPEALQPESSLPVTQEQTPGNPLSGLLNAI 196
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -1
Query: 506 KIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIEKQV 336
+++ E PPAN+ + P+ + PQ ++L+ +S NL T +H E+Q+
Sbjct: 454 EVVTNEEPPANDKPKRGRGRPRKQKPQDGLELTEKKS-TSNLS-TDNAYDHPAERQM 508
>10_08_0825 +
20831170-20831349,20831380-20831547,20831627-20831698,
20831997-20832075,20832182-20832375,20832469-20832558,
20832851-20832940,20833196-20833282,20833477-20833560,
20833690-20833809,20834096-20834103,20834443-20834575,
20835044-20835125,20835330-20835496,20836006-20836493,
20836551-20836638,20836716-20836818,20836932-20837083,
20837191-20837316,20837459-20837529,20837691-20837753,
20838418-20838490,20838972-20839040,20839180-20839257,
20839434-20839484,20839586-20839696
Length = 1008
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/75 (22%), Positives = 28/75 (37%)
Frame = -1
Query: 452 PVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIEKQVILXXXXXXXXXXVALPPKPTI 273
P P +P V F PP ++ ++ + IE LPP I
Sbjct: 25 PTPPPPASRPEVPNHFLPPPPSSISHSVYPVLDPIEVPARAAAAAAAARAIAGLPPHEKI 84
Query: 272 TIESSDEDELEVIQS 228
++ S+ ED + + S
Sbjct: 85 SLPSNSEDLVSIYGS 99
>09_06_0053 - 20537433-20537833,20537910-20538456
Length = 315
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 278 SALVVEPLPQPHPHRLIP-GSPVFQFHAR 361
SA+V++P P P P+ P G+P F H R
Sbjct: 286 SAVVMDPYPTPGPYGAFPAGTPFFHGHPR 314
>01_01_0981 + 7766025-7766753
Length = 242
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 216 QDLDQTCLWRKMCVSQSSTFCSFFC 142
+DL QTC + CVS + FCS C
Sbjct: 21 EDLTQTCRRDRYCVSCARAFCSHCC 45
>05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238
Length = 490
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 290 PPKPTITIESSDEDELEVIQSPSPA 216
PP PT T++ DEDE E I P A
Sbjct: 100 PPNPTPTLDLWDEDEFEGIPVPEAA 124
>06_03_1037 -
27058002-27058082,27058856-27059041,27060033-27060176,
27060284-27061183
Length = 436
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 488 SPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTI 369
SPP A K+PVP P+ + S + PP RT+
Sbjct: 101 SPPPLGEVAPKQPVPAKLFDAPAAEASSSEPPPPPPPRTL 140
>05_01_0210 + 1583176-1584177
Length = 333
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 296 PLPQPHPHRLIPGSPVFQFHARLPQW 373
P P P P L+P P RLPQW
Sbjct: 33 PPPPPPPPPLLPADPPSLERERLPQW 58
>02_05_0286 -
27506925-27507278,27508439-27508812,27509041-27509218,
27510878-27511105,27511215-27511316,27511415-27512131,
27512270-27512387,27512500-27512744,27512854-27513054,
27513920-27514324
Length = 973
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 95 SRHGDDHSFDFSLHGPDLLDQATPSKKKKKK 3
SR G DH S G D ++ A PS +K+K
Sbjct: 238 SRSGSDHLDAISAAGEDDVEDAEPSNSRKRK 268
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 521 ADSNTKIIQKESPPANNNTA-AKKPVPKAENPQPSVDLSFFQSPPQ 387
A+S + +K +PP + AKK PK E P+P V+ S + P+
Sbjct: 233 AESVPPVQKKAAPPKESKAKEAKKEAPK-EAPKPKVEASEEEEAPK 277
>01_06_0802 +
32087661-32087965,32088106-32088220,32088302-32088421,
32089678-32089788,32090084-32090122,32090965-32091069,
32091149-32091187,32091923-32092015
Length = 308
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = +2
Query: 296 PLPQPHP-HRL--IPGSPVFQFHARLPQW 373
P PQP+P HR P SP +RLP W
Sbjct: 27 PKPQPNPPHRFLHAPSSPAAASPSRLPLW 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,819
Number of Sequences: 37544
Number of extensions: 310528
Number of successful extensions: 978
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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