Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326C09f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   0.88 
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    23   4.7  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 25.8 bits (54), Expect = 0.88
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 301 SASSSLNKVLKAQYTDSVWLRRKDWQSASRLRQGRSLAQFVCNLYSVSCLWICTILYRYC 480
           +A  +LNK      +D+       W+ A+ +R+GR L Q+   L  ++  W   IL    
Sbjct: 782 NAIQTLNKYCAKLPSDTFTKLTPIWRCATTVRKGRKLYQYTIRL-PINSPWKEDILIASV 840

Query: 481 INQ 489
            N+
Sbjct: 841 FNE 843


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 295 TPSASSSLNKVLKAQYTDSVWLRRKDWQSAS 387
           T   SS L    +  +TD +W+R   +Q  S
Sbjct: 190 TDPLSSPLQAAPREPFTDRIWIRLSAYQRPS 220


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,606
Number of Sequences: 2352
Number of extensions: 10168
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)