Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326C09f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62547-1|AAC47658.1| 1145|Drosophila melanogaster mitochondrial ...    28   6.7  
U60298-1|AAC47290.1| 1145|Drosophila melanogaster DNA polymerase...    28   6.7  
AY089226-1|AAL89964.1| 1145|Drosophila melanogaster AT02241p pro...    28   6.7  
AE014134-2406|AAF53338.1| 1145|Drosophila melanogaster CG8987-PA...    28   6.7  

>U62547-1|AAC47658.1| 1145|Drosophila melanogaster mitochondrial DNA
           polymerase catalyticsubunit precursor protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +1

Query: 223 NWRSFFSK*YFV*EQHRTDSKLEITPSASSSLNKVLKAQYTDSVWLRRKDW 375
           NW  +  +     E    ++K  +   A  + + +L  QY  ++WL  +DW
Sbjct: 407 NWERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDW 457


>U60298-1|AAC47290.1| 1145|Drosophila melanogaster DNA polymerase
           gamma protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +1

Query: 223 NWRSFFSK*YFV*EQHRTDSKLEITPSASSSLNKVLKAQYTDSVWLRRKDW 375
           NW  +  +     E    ++K  +   A  + + +L  QY  ++WL  +DW
Sbjct: 407 NWERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDW 457


>AY089226-1|AAL89964.1| 1145|Drosophila melanogaster AT02241p
           protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +1

Query: 223 NWRSFFSK*YFV*EQHRTDSKLEITPSASSSLNKVLKAQYTDSVWLRRKDW 375
           NW  +  +     E    ++K  +   A  + + +L  QY  ++WL  +DW
Sbjct: 407 NWERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDW 457


>AE014134-2406|AAF53338.1| 1145|Drosophila melanogaster CG8987-PA
           protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +1

Query: 223 NWRSFFSK*YFV*EQHRTDSKLEITPSASSSLNKVLKAQYTDSVWLRRKDW 375
           NW  +  +     E    ++K  +   A  + + +L  QY  ++WL  +DW
Sbjct: 407 NWERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDW 457


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,885,184
Number of Sequences: 53049
Number of extensions: 380533
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)