Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326C06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 61 9e-11
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 60 3e-10
SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces p... 58 8e-10
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 58 1e-09
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 56 3e-09
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 48 8e-07
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 46 5e-06
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 43 3e-05
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 36 0.005
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 32 0.060
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 29 0.42
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 28 0.73
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 28 0.97
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 28 0.97
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 26 3.0
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 3.0
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 26 3.0
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 61.3 bits (142), Expect = 9e-11
Identities = 32/81 (39%), Positives = 49/81 (60%)
Frame = +2
Query: 5 TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLL 184
T+ RRY +F ++ L +P +IPP+PEK+V+ + D EF+E+RRA LE L
Sbjct: 240 TVQRRYNDFAFLYQLLSNNHPGCIIPPIPEKQVVGRF------DDEFIEQRRAALEVMLR 293
Query: 185 RVASHPRLCFDDQFINFLQEE 247
++++HP L D F FL+ E
Sbjct: 294 KISAHPVLRDDYSFKLFLEAE 314
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 59.7 bits (138), Expect = 3e-10
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Frame = +2
Query: 5 TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLL 184
++ RRY +FE +H+ L Y IPPLP K + ++ + P F+ RR L+ FL
Sbjct: 40 SVRRRYKDFEMLHNILSHDYNGYAIPPLPRKYTVSSF-SGGSLSPIFIARRMQSLQTFLD 98
Query: 185 RVASHPRLCFDDQFINFLQEEHGWRETITDSGYLLQAEN-KIKSLSVS----IRLKKPDP 349
R ++HP + FL E + W+ ++ +Q+EN K K +VS ++ DP
Sbjct: 99 RCSTHPVISNSMHMYQFL-ENNSWKSYYHNA--WMQSENTKSKGNNVSGGIESSIQNLDP 155
Query: 350 EVESFKNYGKQLETN 394
+S KQL N
Sbjct: 156 YAQSLYETAKQLLQN 170
>SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 58.0 bits (134), Expect = 8e-10
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +2
Query: 2 STIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFL 181
S++ RRY+EFE+ HD L+ V IPPLP K ++ R D + +E RR GLENFL
Sbjct: 61 SSVRRRYSEFEKFHDMLERESGRVSIPPLPGK--IFTQRFRD----DVIEERRQGLENFL 114
Query: 182 LRVASHPRLCFDDQFI-NFLQ 241
VA HP + + + +FLQ
Sbjct: 115 RLVAGHPLIQTHSRVLSSFLQ 135
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 57.6 bits (133), Expect = 1e-09
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Frame = +2
Query: 5 TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRK---SDTTDPEFVERRRAGLEN 175
++WRRY++FE + ++ YP ++PP+P K+ L ++ K +D EF+ R LE
Sbjct: 51 SVWRRYSDFESLVKLMRRQYPAAIVPPIPGKQSLLSYAKHPRKAKSDAEFLNFRSRMLEL 110
Query: 176 FLLRVASHPRLCFDDQFINFLQEEHGWRETIT 271
FL + HP + + F F+ W T++
Sbjct: 111 FLRQCLLHPCIRSNPIFDKFIHSTVSWHVTLS 142
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 56.0 bits (129), Expect = 3e-09
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = +2
Query: 2 STIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEF---VERRRAGLE 172
S I RY+EF + L YP ++PPLP+K + + + T + +E R+ L+
Sbjct: 98 SEIHHRYSEFASLRVQLSRLYPTCLVPPLPDKHKIMDYLINVTKNQRMSRMLEERKRLLQ 157
Query: 173 NFLLRVASHPRLCFDDQFINFLQEEHGWRETI 268
FL RVA HP L + F FL W+E +
Sbjct: 158 LFLRRVAQHPILGLSEVFRKFLSRHVSWKEVL 189
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 48.0 bits (109), Expect = 8e-07
Identities = 37/169 (21%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Frame = +2
Query: 14 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 193
R + EF++ YL T+P +IP +PE + + E + ++GL+++L V+
Sbjct: 137 RTHAEFKKFAKYLISTHPECLIPAVPEAKT-----SVSSGIKEDLIYLKSGLQSWLNYVS 191
Query: 194 SHPRLCFDDQFINFLQEEHGWRETITDSGYLLQAENKIKSLSVSIRLKKPDP--EVESFK 367
++P L +D + F++ ++G+ I + +K ++ PDP + + +
Sbjct: 192 TNPNLLYDPELQLFVESDYGYSPLINTG----NPTSGLKRKALKQFPLPPDPCQALANLR 247
Query: 368 NYGKQLETNLGNFLYTRSKIIEKNYALCKLHANYGKLFSEWSVIEKEMG 514
K N + K++ + +L HA+ G+ ++SV E+ G
Sbjct: 248 PIVKSFYKNAKDAEIKLEKLVNRKQSLALTHADLGQSLIDYSVEEQHNG 296
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 45.6 bits (103), Expect = 5e-06
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 6/151 (3%)
Frame = +2
Query: 14 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 193
RR+++F ++ + L V+PPLP K L + K F+ RR L ++ R A
Sbjct: 59 RRFSDFVKLQEILSRMNEDCVVPPLPAKHKL-EYIKGGRFSDNFINRRAKLLNRYITRCA 117
Query: 194 SHPRLCFDDQFINFLQEEHGWRETIT-DSGYLLQAENKIKSLSVSI-----RLKKPDPEV 355
HP L FI FL E W + L +K+ +S S+ +LK+ E
Sbjct: 118 LHPVLHQSPHFIAFL-ENPNWNNYVRFFIQPKLNNTSKLDEISDSLLNAFSKLKEEPTEF 176
Query: 356 ESFKNYGKQLETNLGNFLYTRSKIIEKNYAL 448
+ +++ +Q + N + K++ AL
Sbjct: 177 DIQRDHVQQFMFGISNLEGSIQKLLRLEKAL 207
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 42.7 bits (96), Expect = 3e-05
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +2
Query: 14 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 193
RRY EF ++H L+ TYP V P+K ++ + K+ +E RR LE +L +
Sbjct: 740 RRYREFAELHKQLKQTYPGVRSLKFPQKSIITSLNKN------VLEYRRGALEEYLQSLF 793
Query: 194 SHPRLCFDDQFINFLQEEH 250
P +C FL +++
Sbjct: 794 RMPEVCDSKMLRMFLSQQN 812
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 35.5 bits (78), Expect = 0.005
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +2
Query: 8 IWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLR 187
+ RRY++F +H YL YP +P +P K+ + +F GL +F+
Sbjct: 317 VLRRYSDFFWLHSYLMKKYPFRRVPLIPLKK----FHSKCFNSKQFFRTPPPGLSDFVND 372
Query: 188 VASHPRLCFDDQFINFLQEEH---GWR 259
++ HP D+ F E + WR
Sbjct: 373 LSHHPIFSNDEVVRVFFTEPNVFKNWR 399
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 31.9 bits (69), Expect = 0.060
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 29/191 (15%)
Frame = +2
Query: 8 IWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAW--------------RKSDTTDPEF 145
I R+Y++F H L +YP+ +P LP K + R SDT DP+
Sbjct: 206 IARKYSDFSHFHHLLLKSYPNAYVPRLPPKDDHDTYLNSSEDSTLSPLPSRSSDTNDPQS 265
Query: 146 -------VERRRAGLENFLLRVASHPRLCFDDQFINFLQEEHG--WRETITDSGY----- 283
ER R L ++ + + L ++ ++FL ++ +TD +
Sbjct: 266 DSQHVLRQERMRIELRQYIKNILNDDELHLTEEVLSFLTDDPVTLTASELTDINFRQELD 325
Query: 284 -LLQAENKIKSLSVSIRLKKPDPEVESFKNYGKQLETNLGNFLYTRSKIIEKNYALCKLH 460
+ Q E + S R K+ D +E FK E N L+T K EKN ++ +L
Sbjct: 326 VIRQLEQQKFVEIASQRAKELDVYMEEFKR--SLTENNGFTTLFTELK--EKN-SISELS 380
Query: 461 ANYGKLFSEWS 493
+ K EW+
Sbjct: 381 PSLQKTI-EWA 390
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 167 LENFLLRVASHPRLCFDDQFINFLQEEHGWRETI 268
L N LL + P++C + +NF + +GW E I
Sbjct: 1476 LSNVLLPMPQIPKMCLNIDTLNFPRSMNGWLEEI 1509
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 0.73
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 508 LFLDDAPFTKQFAVVRVQFT*GVIFF 431
+FL+D PFT+ F VV + T G +F
Sbjct: 98 VFLNDEPFTRTFEVVMSRLTSGPTYF 123
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 212 FDDQFINFLQEEHGWRETITDSGYLLQAENKIKSLSVSIRLKKPDPEVESFKNYGKQ 382
F + F +F EE+ + T + + Q NK++S +SI K E E N+ Q
Sbjct: 393 FIENFSDFADEEYVFEICSTITSHSEQIFNKLESWDMSIYFDKDLSECEQATNFAVQ 449
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 27.9 bits (59), Expect = 0.97
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -3
Query: 408 KKFPKLVSNCFP*FLKDSTSGSGFFNLIDTDSDFILFSACSKYPLSVIVSRQPCSSCRKL 229
K FP L++ F L + + FF + D D + +C KY S S +P S R L
Sbjct: 201 KGFPDLMTRKFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFKYG-SNAYSHEPHSQLRNL 259
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 257 RETITDSGYLLQAENKIKSLSVSIRLKKPDPEVESFKNYGKQLETNLGNFLYTRSKII 430
R+T D + Q + ++ + +I P PE SF+NY KQ G + T +I
Sbjct: 296 RKTQQDQQHQQQLQQQLSATPQAIN---PPPERSSFRNYQKQNFDEKGGDINTTVPVI 350
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 3.0
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 194 SHPRLCFDDQFINFLQE--EHGWRETITDSGYLLQAENKIKSLSVSIRL--KKPDPEVES 361
S P D INF ++ +H D + A N + +++ + +P
Sbjct: 85 SSPLKKLDGTMINFKEKNIQHDLDGVENDFATVQSASNGVHAINGKRTHPDESENPRKLP 144
Query: 362 FKNYGKQLETNLGNFLYTRSKIIEKNYALCKLHANYGKLFSEWSVIEKEMGD 517
KN+ + ++ N F+Y + I ++ Y++ H N L ++ E E D
Sbjct: 145 KKNFVEAIDANSPGFVYRPTSIRDRAYSISSNHDNESTLTEGIALKEIESPD 196
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 365 KNYGKQLETNLGNFLYTRSKII 430
K+YG+ +ET++ F YTR + I
Sbjct: 140 KDYGQTIETDIKRFAYTRHEPI 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,721
Number of Sequences: 5004
Number of extensions: 50480
Number of successful extensions: 132
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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