Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326C06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104... 75 3e-14
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 47 8e-06
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 39 0.003
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 33 0.14
06_03_0452 + 20931484-20933872,20933950-20934074 29 2.3
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 28 4.0
11_01_0207 - 1620192-1620280,1620408-1620451,1620703-1620791,162... 27 6.9
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 27 6.9
>01_06_1430 -
37309737-37309946,37310049-37310100,37310348-37310427,
37310538-37310606,37310710-37310843,37311173-37311332,
37311483-37311554,37312113-37312246,37312386-37312521,
37313273-37313416
Length = 396
Score = 74.9 bits (176), Expect = 3e-14
Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Frame = +2
Query: 14 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 193
RRY++FE +HD L Y + IPPLPEK + +R S EF+E RR L+ F+ R+A
Sbjct: 63 RRYSDFEWLHDRLAEKYKGIFIPPLPEKNAVEKFRFS----KEFIELRRQALDLFVNRIA 118
Query: 194 SHPRLCFDDQFINFLQ--EEHGWRETITDSGY------LLQAENKIKS--LSVSIRLKKP 343
SHP L FLQ EE RE ++G LQ ++S V + +KP
Sbjct: 119 SHPELKQSGDLKIFLQADEEKMDRERSYETGIFKKPSDFLQMFKDVQSKVSDVVLGKEKP 178
Query: 344 ----DPEVESFKNYGKQLETNLGNFLYTRSKIIEKNYALCKLHANYGK 475
PE E KNY +LE +L ++++++ L + A++GK
Sbjct: 179 VEESSPEYEKLKNYIFELENHLAEAQKQAFRLVKRHRELGQSLADFGK 226
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 47.2 bits (107), Expect = 8e-06
Identities = 27/78 (34%), Positives = 39/78 (50%)
Frame = +2
Query: 14 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 193
RR+ +F + D L + +PP P+K + EFV +RRA LE +L R+A
Sbjct: 151 RRFRDFVTLADRLAEAFRGHFVPPRPDKNTV---ESQVMQRDEFVAQRRAALERYLWRLA 207
Query: 194 SHPRLCFDDQFINFLQEE 247
HP + D+ FLQ E
Sbjct: 208 EHPAIGPSDELRVFLQAE 225
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = +2
Query: 14 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 193
RR+ + + D L Y + +P P+K ++ EFV +R A L+ +L R+A
Sbjct: 201 RRFRDVVALADRLAAAYRGLFVPARPDKSIVEG---QVMQRHEFVNQRCAALQRYLGRLA 257
Query: 194 SHPRLCFDDQFINFLQEEHG 253
+HP + + +FL E G
Sbjct: 258 AHPTIGRSAELHDFLTEPSG 277
>05_05_0195 +
23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +2
Query: 14 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 193
RR+ + + D L + + IP P+K V+ +FV +R + L+ +L R+A
Sbjct: 137 RRFRDVVALADRLAAAHRGLFIPARPDKSVVEG---QVMQRHDFVNQRCSALQRYLRRLA 193
Query: 194 SHPRLCFDDQFINFLQE 244
+HP + FL E
Sbjct: 194 AHPVVGHSPDLRTFLTE 210
>06_03_0452 + 20931484-20933872,20933950-20934074
Length = 837
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 501 SMTLHSLNSLP*FACSLHRA*FFSIILDLVYKKFPKLVSNC 379
S+T H LN+LP CSL + + + + FP + NC
Sbjct: 86 SLTGHGLNNLPAAICSLTKLSHIDLSRNSISGSFPTALYNC 126
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 311 SLSVSIRLKKPDPEVESFKNYGKQLET-NLGNFLYTRSKIIEKNYALCKLHANYG 472
S+SV+ RL K + F+ Y + ++ N GNFL ++E ++AL K YG
Sbjct: 248 SISVARRLLK---QGLPFRGYDESKDSYNKGNFLEFHDMLLEHDHALGKAVGKYG 299
>11_01_0207 -
1620192-1620280,1620408-1620451,1620703-1620791,
1620870-1620914,1621441-1621548,1621638-1621723,
1622202-1622289,1622403-1622576,1623084-1623159,
1623256-1623305,1623392-1623454,1623689-1623791,
1623871-1623973,1624679-1624739,1624864-1624904,
1625076-1625154
Length = 432
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +2
Query: 335 KKPDPEVESFKNYGKQLE--TNLGNFLYTRSKIIEKNYALC--KLHAN-YGKLFSEWSVI 499
K + E+E N LE ++ LY +I A C LH Y ++FS W+V
Sbjct: 199 KDTEGEIEMIDNSRSTLEEDSHKQKSLYKNWPLISSIIAYCVFTLHDTAYSEIFSLWAVS 258
Query: 500 EKEMG 514
EK G
Sbjct: 259 EKRYG 263
>04_03_0659 - 18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 68 HVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGL-ENFLLRVASHPRLC 211
H+ I +PEK ++ WRK D + E R L E+ +LR R C
Sbjct: 861 HLNIMKIPEKYIIDRWRKKDYKEKSDFEDRIIPLSESSVLRFNILSRKC 909
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,201,372
Number of Sequences: 37544
Number of extensions: 309651
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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