Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326C04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         28   0.73 
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   5.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   9.0  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 154 HCREESPILSRRKHYFVGRFELLAWPVFPVRQDS 255
           HCR  SP  +    Y      LLAWP +  + DS
Sbjct: 266 HCRNSSPHDNPILEYLFALVSLLAWPFYRRKLDS 299


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 197 ISSGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLVD 304
           IS  D ++W GL   YA++  +  A K+     ++D
Sbjct: 679 ISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILD 714



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +2

Query: 65  VHDKELKIEENPRVY---CGRHLANARMILCYDTVEKRAQS---YLDANIISSGDLSSWP 226
           V + EL IE++ +        + AN  + + Y + ++ ++S   YLDA  I    + +W 
Sbjct: 15  VKNYELAIEQSKKALSFDANNYNANVFLGVAYFSTKQLSESKEAYLDAIKIDEKAVLAWQ 74

Query: 227 GLSSQYAKT 253
           GL + Y  T
Sbjct: 75  GLWNLYEST 83


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 469  IXKKTLNCFSSFDLKNK 519
            I K  L+CFS F LKNK
Sbjct: 1525 ISKVGLSCFSQFVLKNK 1541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,656
Number of Sequences: 5004
Number of extensions: 34090
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)