Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326C02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    29   0.32 
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe...    28   0.97 
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    27   1.3  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   5.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.8  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    25   9.0  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 156 RRTTDRHKNRKKCYFGLCTVYIFICML*KAVISILQTDT 272
           R T   ++N KKC F   +++IF  +L  + +S+LQ DT
Sbjct: 10  RGTDFLNRNFKKCLFACISIFIF-ALLALSFLSLLQPDT 47


>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 269

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 354 YLKKFFSYNIFSEFYTLNGSPVKLQKCRLNQIASFHPSIFI*MNAVVIVLFKFS 515
           Y   FFS  +FS  +T+ G  ++L+   +  I+   PS  +   ++  V++ FS
Sbjct: 108 YWTAFFSLCLFSSSFTMYGQSLRLRNGFVEMISMKLPSKLVFGKSLWFVVYAFS 161


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 86  HQLPISESPVKIGPAVPENSRNKQTDD 166
           H +P+ E  V IGP  PEN   K+  D
Sbjct: 417 HGIPVQERIVNIGPNKPENRVTKEMLD 443


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 214 TVHKPK*HFLRFLCLSVVRLFVPAILWNGWTDFD 113
           T  KPK  F RF+ LSV  +F  +++   W   D
Sbjct: 237 TCVKPKIRFSRFILLSVTVVFTFSLILFPWIYMD 270


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 372  SYNIFSEFYTLNGSPVKLQKCRLNQIASFHPS 467
            S++  S+F + NGSP  +     +QI++  P+
Sbjct: 3083 SFSSVSQFNSKNGSPSSIDSSEKHQISTVKPA 3114


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 167 CRPSVCSGYSLERL 126
           C P+ CSG  LERL
Sbjct: 37  CNPNACSGKRLERL 50


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 514 ENLNKTITTAFIQINIDG*KEAIWFKRHFC 425
           E L KTI T F++   DG     WF    C
Sbjct: 428 EYLKKTILTDFMRFGFDGSGADNWFDAGSC 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,202
Number of Sequences: 5004
Number of extensions: 39043
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)