Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326C02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778...    28   5.2  
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590...    27   6.9  
02_04_0305 - 21873195-21873788,21873878-21874019,21874597-218747...    27   9.1  

>02_05_0936 -
           32875479-32875573,32875794-32876028,32877752-32877848,
           32878863-32878927,32879506-32879571,32879735-32879842,
           32880169-32880303,32880582-32880647,32881172-32881222,
           32881312-32881386,32881834-32881896,32882694-32882783,
           32882903-32883100,32883189-32883315,32883482-32884100,
           32884228-32884265,32884651-32884718,32885056-32885100,
           32885243-32885302,32885510-32885593,32885677-32885868,
           32887361-32887663
          Length = 959

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 162 TTDRHKNRKKCYFGLCTVYIFICML*KAVISILQTDTPILFIC 290
           T +R   ++ C +  C V    C+L   +IS L   T  +FIC
Sbjct: 789 TRERPFMKRPCRYPKCHVLFMACILVHGLISTLGYQTVWVFIC 831


>04_04_0827 - 28457858-28458028,28458513-28458669,28458984-28459083,
            28459204-28459231,28459321-28459396,28461276-28461355,
            28461642-28461805,28461897-28462056,28462154-28462277,
            28462901-28463941,28464141-28464259,28464512-28464823,
            28465222-28465425,28466068-28466751,28467301-28467474
          Length = 1197

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 289  HINKIGVSVCNIEITAFYNMHMNI 218
            H N I +++C I   A +N+H NI
Sbjct: 1065 HYNSISIAICLIYHGAVFNIHFNI 1088


>02_04_0305 -
           21873195-21873788,21873878-21874019,21874597-21874782,
           21874911-21875058,21875172-21875269,21875384-21875469,
           21875741-21875825,21879298-21879478,21879682-21879874,
           21881429-21881566,21881892-21881900
          Length = 619

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 188 KMLFWFMYRIYIHMHVVKSGYF 253
           + LFWFM ++   +++ K GYF
Sbjct: 569 RKLFWFMSKVLHFVYMEKDGYF 590


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,355,929
Number of Sequences: 37544
Number of extensions: 201648
Number of successful extensions: 347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)