Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326C02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical pr...    32   0.22 
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC199172-4|ABO33272.1|  304|Caenorhabditis elegans F-box a prote...    28   4.7  
U58747-3|AAL27233.2|  420|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical
           protein C35D6.9a protein.
          Length = 304

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 354 YLKKFFSYNIFSEFYTLNGSPVKLQKCRLNQIASFH---PSIFI*MNAVVIVLFKFSYL 521
           Y+  FF++NIFS    +   P+     +L+ + S     P  FI   A+ +++FKF ++
Sbjct: 173 YIVIFFTFNIFSILSAILHVPMYFSVRKLSNLVSVKRSTPQRFILWQAITVLIFKFMFI 231


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 175 TKIVKNVILVYVPYIYSYACCKKRLFQYYKQTLQSYLYV 291
           T+IV   I  ++PY+Y   CC      Y+ Q+  ++ ++
Sbjct: 237 TQIVSFFITCFIPYLYIMICC---YLNYHNQSANNFAFI 272


>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 193 HFLRFLCLSVVRLFVPAILWNGWTDFDGTF 104
           HF  F+C S++ +   + L +GWT F  TF
Sbjct: 81  HFEAFICYSMMHVLQTSSLISGWTVFLTTF 110


>AC199172-4|ABO33272.1|  304|Caenorhabditis elegans F-box a protein
           protein 29 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 295 SIHINKIGVSVCNIEITAFYNMHMNIYTV 209
           ++H NKI + +CN  ++ +++    IY+V
Sbjct: 45  NVHFNKISIELCNCYVSIYFDEIEIIYSV 73


>U58747-3|AAL27233.2|  420|Caenorhabditis elegans Hypothetical
           protein C55F2.1a protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 187 KNVILVYVPYIYSYACCKKRLFQYYKQTLQSYL 285
           K+ +L ++   + Y C KK LFQ  KQ +   +
Sbjct: 215 KHFMLSFLQNFHKYNCIKKSLFQLNKQAIDDLI 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,628,057
Number of Sequences: 27780
Number of extensions: 211814
Number of successful extensions: 475
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)