Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326C02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/29 (27%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +3

Query: 195 YFGLCTVYIFICML*KAVISIL--QTDTP 275
           +  +CTV++F+ ++   +++I+   +DTP
Sbjct: 310 FMSVCTVFVFMALMEYCLVNIVLGDSDTP 338


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 196 ILVYVPYIYSYACCKKRLFQYYKQTLQSYLYV*III 303
           + V+ P  Y        L+Q Y+Q+L  Y Y  +I+
Sbjct: 427 VAVHDPVFYQLYKKVMNLYQQYQQSLPVYQYNDLIL 462


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 269 HSNLIYMYRLSSTVRCF*LNFNEVYSIEIPQEV 367
           H+N  Y Y  ++  +    N N +  I IP  V
Sbjct: 91  HNNNNYKYNYNNNCKKLYYNINYIEQIPIPVPV 123


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 345 PLKYLKKFFSYNIFSEFYT 401
           P  Y  KFF Y I  E Y+
Sbjct: 239 PDPYNTKFFRYRITPELYS 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,839
Number of Sequences: 438
Number of extensions: 2439
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)