Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326C01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.32 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    29   0.42 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   0.97 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.7  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   1.7  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.2  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   3.0  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    26   3.9  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    26   3.9  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    26   3.9  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   5.2  
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.8  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   9.0  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 19/88 (21%), Positives = 38/88 (43%)
 Frame = +3

Query: 255 KYLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPT 434
           K+L +    +    +TPG T ++      +P PS +           +  ++ +  ++ T
Sbjct: 8   KFLLLVTAVMAQTEYTPGFTTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNIT 67

Query: 435 SIARISSTLIVTRTTSQDVYTCLATTSS 518
           SI    ST   + TT+    T + TT++
Sbjct: 68  SIVPPPSTSHNSTTTTVPPTTSMNTTTT 95


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 78  LRESHQYYRAVVRMHLVLL 134
           L+ESHQ YR +V +HL LL
Sbjct: 297 LKESHQIYRKMVSLHLELL 315


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
 Frame = +3

Query: 216 SIENVQA-KSDGSHKYLSITQGPLPSYAH-----TPGTTIELTCEAAGSPAPSVHWFKND 377
           S +N  A K+D S +    T     +Y++     T  T  + T E   S +       N 
Sbjct: 244 STQNPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNT 303

Query: 378 SPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQDVYTCLATTS 515
           SP     + S+  I  SP+     SST  +T  ++    T ++ +S
Sbjct: 304 SPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTIISRSS 349


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +3

Query: 291 YAHTPGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVT 470
           Y  TP T+  LT     + + SV +         Y + S+  + S+P +    +++  V 
Sbjct: 481 YTSTPVTSTPLTTTNC-TTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 471 RTTSQDVYTCLATTS 515
            T++    T LATT+
Sbjct: 540 YTSTPVTSTPLATTN 554


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 177 LNKHIKLLSDIDNSIENVQAKSDGSHKYLSI 269
           L+KH   LS ++N ++ +    D  HKY  +
Sbjct: 493 LDKHQTALSSVENRLDEISEIVDSYHKYSGV 523


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 303 PGTTIELTCEAAGSPAPSVHWFKNDSP 383
           PG T + TC   GS   +V++ KN  P
Sbjct: 427 PGCTYDNTCSQRGSVIANVYFAKNKQP 453


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 165 QSAHLNKHIKLLSDIDN-SIENVQAKSDGSHKYLSITQ 275
           Q AH+N+    +SD+DN S+E V+   +G+   +S+ +
Sbjct: 47  QCAHMNRRPAWISDLDNSSLEVVRHLGEGNGGAVSLVK 84


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 213 NSIENVQAKSDGSHKYLSITQGPLPSYAHTPGTTI 317
           +S++ + AK+D     + + +GPLP Y    G+T+
Sbjct: 10  SSMDELSAKNDNE---IDLEKGPLPEYNSEDGSTL 41


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 213 NSIENVQAKSDGSHKYLSITQGPLPSYAHTPGTTI 317
           +S++ + AK+D     + + +GPLP Y    G+T+
Sbjct: 10  SSMDELSAKNDNE---IDLEKGPLPEYNSEDGSTL 41


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 210 DNSIENVQAKSDGSHKYLSITQGPLPSYAHTPGTTIELTCEA-AGSPAPSVHWFKNDSPV 386
           D+ +E+       +HK L     P+PS   TP +   L  ++  G   P+V   + D  V
Sbjct: 202 DDIVESFPKYPVDAHKLLEPLPTPIPSLPSTPSSYQNLPSQSLTGESLPTVSNQEKDEGV 261

Query: 387 YE 392
            E
Sbjct: 262 IE 263


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 339 GSPAPSVHWFKNDSPVYEYDVESNELIDS-SPTSIARISSTLIVTRTTSQDVYTCLATTS 515
           GS + + H  ++   +Y  D   +  + + SP +I RISS    T T++++V   + T S
Sbjct: 229 GSSSTTSH-DRSSGSIYSNDSFQDPRVQANSPLTIQRISSAAPSTPTSTENVNYNMTTPS 287

Query: 516 S 518
           S
Sbjct: 288 S 288


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 506 GEAGVHILRGRTRHYES*GNS 444
           GE    I++ RTRHY++ GN+
Sbjct: 37  GEKLSKIVKARTRHYQNVGNA 57


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 255 KYLSITQGPLPSYAHTPGTTIELT 326
           K ++ITQ P   Y   P +T+ELT
Sbjct: 278 KVVNITQKPKTKYKPLPLSTVELT 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,474
Number of Sequences: 5004
Number of extensions: 36984
Number of successful extensions: 124
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)