Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326C01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 31 0.74
09_04_0164 + 15265878-15268701,15268782-15269200 30 1.3
06_01_0063 - 534138-534605 29 3.0
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726... 29 3.0
10_08_0734 + 20195434-20196225 27 6.9
02_02_0061 + 6468190-6471046,6471318-6471736 27 6.9
04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985 27 9.1
04_04_0437 + 25193263-25194627 27 9.1
03_05_0612 + 26117306-26118045,26118151-26118680,26119247-261192... 27 9.1
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 30.7 bits (66), Expect = 0.74
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 339 GSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQDVYTCLATTSS 518
GSP P +H F+N++ E ++ SN +SS I ++ T + S++ L TSS
Sbjct: 233 GSPMPQMHNFQNETSSSELNISSNCSPESSIKVTQDIGASTTGTDSVSEERNLELERTSS 292
>09_04_0164 + 15265878-15268701,15268782-15269200
Length = 1080
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 363 WFKNDSPVYEYDVESNELIDSSPTSI 440
W N + +Y DVE+N L D PTSI
Sbjct: 307 WLANCTILYLLDVENNSLADDLPTSI 332
>06_01_0063 - 534138-534605
Length = 155
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 117 MHLVLLFTVAALLGSCQSAHLNKHIKLL-SDIDNSIENVQAKSDGSHKYLSITQGPLPSY 293
+HL+ L T L SC ++L +DID+S V A+ DGS+ Y S + L
Sbjct: 16 LHLLFLLTHLRRLSSCL-------LRLAGADIDDSPTAVDAEYDGSYSYSSQSSQLLELD 68
Query: 294 AHTPGTTIELTCEAAGSP 347
H+P + + P
Sbjct: 69 DHSPALRFDALSSSLQPP 86
>01_01_0920 +
7264498-7264573,7264705-7264745,7265339-7265408,
7265500-7265648,7266143-7266238,7266326-7266396,
7266510-7266571,7266651-7266714,7267608-7267692,
7267777-7267903,7268016-7268080,7268739-7268796,
7268927-7269066,7269624-7269693,7269910-7269981,
7270188-7270234,7270468-7270566
Length = 463
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 264 SITQGPLPSYAHTPGTTIELTC--EAAGSPAPSVHWFKNDSPVYE 392
S +GP P+ HT T ++T A S P W K+ +YE
Sbjct: 353 STERGPHPNIQHTENITQDMTARKHLAASVLPGAEWRKDGHLLYE 397
>10_08_0734 + 20195434-20196225
Length = 263
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +3
Query: 240 SDGSHKYLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELI 419
SDGS K + P +T TT T +AG+ + + SP Y+YD +
Sbjct: 38 SDGSDKQSPMATPP----PNTSSTTTTTTTGSAGNKTTAAAGSSSFSPSYDYDYVDTD-A 92
Query: 420 DSSPTSIARISSTL 461
D+S S +++ L
Sbjct: 93 DTSVGSTPSVAALL 106
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 309 TTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISS 455
T+++L+ P P N + ++ VE+NEL S P+SI +SS
Sbjct: 259 TSLDLSSNNLVGPVPDT--IGNLYSIKQFHVENNELEGSLPSSIFNLSS 305
>04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985
Length = 773
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 382 GESFLNQCTDG-AGDPAASQVNSIVVPGVCAYDGRGPCVIDKYL*D 248
G S++ +C +G G+P + N VCA+ R PC+ +Y D
Sbjct: 293 GTSYICRCNEGYEGNPY--EQNGCSGLDVCAHPERNPCMYPEYCKD 336
>04_04_0437 + 25193263-25194627
Length = 454
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 375 DSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQDVYTCL 503
DSPV + +N P SIAR+++TL + + CL
Sbjct: 252 DSPVNYLSLANNNFTGEIPKSIARMANTLFEVLFLNNKLSGCL 294
>03_05_0612 +
26117306-26118045,26118151-26118680,26119247-26119278,
26119910-26121175
Length = 855
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 162 CQSAHLNKHIKLLSDIDNSIENVQAKSDGSHKYLSI 269
C+ A L K + +SD +N ++N + G H+Y++I
Sbjct: 357 CEQAALEK-FEWISDDENVLDNEDIVTGGYHEYINI 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,069,106
Number of Sequences: 37544
Number of extensions: 249455
Number of successful extensions: 775
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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