Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326B12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 71 8e-14
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 26 3.9
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 26 3.9
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 26 3.9
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 3.9
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 25 9.0
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 9.0
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo... 25 9.0
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 9.0
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 71.3 bits (167), Expect = 8e-14
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Frame = +3
Query: 87 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAK 266
M++ + L KAI LV A + D + Y +A + Y+ ++YF+ A+KYE + E++KE IR+K
Sbjct: 1 MSNPDCLSKAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYE-KNEKSKEIIRSK 59
Query: 267 CLQYLDRA--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGKLEGAI 440
++YLDRA L+ L AI
Sbjct: 60 VIEYLDRAEKLKVYLQEKNNQISSKSRVSNGNVEGSNSPTANEALDSDAKKLRSALTSAI 119
Query: 441 VVEKPHVKWSDVAG 482
+VEKP+V+W D+AG
Sbjct: 120 LVEKPNVRWDDIAG 133
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 357 FWIPRPLLVFSFDLF*DIPLIFQLYQDIEG-ILHEYFLLPFHL 232
+W + F F L IP++F L+ I G LH + + HL
Sbjct: 310 YWTLNNIPNFLFALLSIIPILFALFYSISGSTLHSFRSIKSHL 352
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +3
Query: 141 EEDKNKNYEEALR--LYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLD 284
E+ N E+ L+ +Y F VK+ A + + S++ C QYLD
Sbjct: 102 EQYNNPVAEKLLKDAIYNCNTPLFEKNVKWLATFDHSSPSVQQSCFQYLD 151
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 87 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQ 233
+TSS + KAI L TK+ + K N L + +E +K E +
Sbjct: 360 ITSSTKITKAIGLNTKSNDSSKKDNTSFQLHQVLNSIEIPKVEIKQEVE 408
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 132 KATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESI 257
K +E K+K+ ++ +LYE + + +YE E KE +
Sbjct: 164 KKLQEKKDKSLKDEKKLYEAETAFEQSSQEYEYYNEMLKEEL 205
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 153 NKNYEEALRLYEHGVEYFL-HAVKYEAQGERAK 248
N+N+E+ L +HG + L +A + QG K
Sbjct: 367 NQNFEDRTHLSDHGAHFHLGNANDFNMQGSSRK 399
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 96 SNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQ 275
+++ Q+AID K E KNKN E A + E + H ++ + +R K+ + L+
Sbjct: 509 ASSAQEAIDKKEKMEREMKNKNLELADMILER--DRARHELETMHRSQRDKQESTERELR 566
Query: 276 YL 281
L
Sbjct: 567 LL 568
>SPAC2F3.02 |||ER protein translocation subcomplex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 135 ATEEDKNKNYEEALRLYEHGVEYFLHAVKYE 227
A E K K YEEA +LY ++ L+ +E
Sbjct: 69 ANEAFKRKKYEEAKKLYGLALQLALNRCTWE 99
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 441 VVEKPHVKWSDVAG 482
VVE P+V+W D+ G
Sbjct: 488 VVEVPNVRWEDIGG 501
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,209
Number of Sequences: 5004
Number of extensions: 22304
Number of successful extensions: 75
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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