Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326B12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0268 - 2214923-2215048,2215131-2215286,2215371-2215469,221... 61 5e-10
02_01_0450 + 3234378-3234834,3235118-3235223,3235722-3235920,323... 56 2e-08
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222... 52 4e-07
04_01_0600 + 7907142-7908047,7908218-7908316 29 1.7
05_03_0414 + 13650483-13651388,13651559-13651657 29 2.3
12_01_0668 - 5682664-5682916,5684542-5684576,5684643-5684693,568... 29 3.0
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 29 3.0
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837 27 6.9
08_01_0462 + 4072369-4072630,4072732-4072814,4072937-4073020,407... 27 6.9
01_06_0155 - 27057150-27057425 27 6.9
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674... 27 9.1
04_04_0236 + 23825368-23825763,23826229-23828667 27 9.1
>01_01_0268 -
2214923-2215048,2215131-2215286,2215371-2215469,
2215557-2215631,2215732-2215800,2216515-2216713,
2220162-2220267,2221117-2221588
Length = 433
Score = 61.3 bits (142), Expect = 5e-10
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Frame = +3
Query: 96 SNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQ 275
SN ++AI+ V +A +ED NY +A LY + +EYF +KYE + + KE+I AK +
Sbjct: 3 SNFKEQAIEYVKQAVQEDNAGNYVKAFPLYMNALEYFKTHLKYE-KNPKIKEAITAKFTE 61
Query: 276 YLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGK----LEGAIV 443
YL RA Q K L AI+
Sbjct: 62 YLRRAEEIRAVLDEGGGGGGANGGDAAVATRPKTKGKDGEGGGDDSEQSKLRAGLNSAII 121
Query: 444 VEKPHVKWSDVAG 482
EKP++KW+DVAG
Sbjct: 122 TEKPNIKWNDVAG 134
>02_01_0450 +
3234378-3234834,3235118-3235223,3235722-3235920,
3236119-3236187,3236299-3236373,3236484-3236582,
3236694-3236864,3237394-3237519
Length = 433
Score = 55.6 bits (128), Expect = 2e-08
Identities = 39/125 (31%), Positives = 54/125 (43%)
Frame = +3
Query: 108 QKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLDR 287
++ I LV KA EED N+ AL LY H ++Y +KYE + R +++I AK Y+ R
Sbjct: 7 EQGILLVRKAVEEDDAGNHARALPLYVHALDYLAAHLKYE-RNPRVRDAITAKLAGYIAR 65
Query: 288 AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGKLEGAIVVEKPHVKW 467
A L+ L AIV EKP+V+W
Sbjct: 66 A-EEIRDALLPAAGDDATPPAAAAEEGKAKCGGGEDESDRAKLRAGLHSAIVSEKPNVRW 124
Query: 468 SDVAG 482
SDV+G
Sbjct: 125 SDVSG 129
>01_01_0270 -
2225250-2225263,2225549-2225732,2225817-2225972,
2226276-2226374,2226489-2226563,2226682-2226750,
2226917-2227115,2227492-2227597,2228118-2228526
Length = 436
Score = 51.6 bits (118), Expect = 4e-07
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = +3
Query: 96 SNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQ 275
SN ++AI+ V +A +ED NY +A LY + +EYF +KYE + + K++I AK +
Sbjct: 3 SNFKEQAIEYVKQAVQEDNGGNYVKAFPLYMNALEYFKTHLKYE-KDPKIKDAIAAKFTE 61
Query: 276 YLDRA 290
YL RA
Sbjct: 62 YLRRA 66
Score = 34.7 bits (76), Expect = 0.046
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +3
Query: 417 QGKLEGAIVVEKPHVKWSDVAG 482
+G L AIV KP VKWSDVAG
Sbjct: 92 RGMLRSAIVAAKPSVKWSDVAG 113
>04_01_0600 + 7907142-7908047,7908218-7908316
Length = 334
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/87 (28%), Positives = 38/87 (43%)
Frame = +3
Query: 30 VKDTAEQFFAP*LW*I*KTMTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFL 209
+ D ++ W + + + L K +DL TK +K +N E RL +H +
Sbjct: 134 IDDFVQEMEMTRFWPLERREVIAEVLLKNVDLKTKYHCPEKYENEE---RLADHKAQCSF 190
Query: 210 HAVKYEAQGERAKESIRAKCLQYLDRA 290
V G RAK S+R C+Q D A
Sbjct: 191 RPVTCPNDGCRAKVSVR--CMQDHDSA 215
>05_03_0414 + 13650483-13651388,13651559-13651657
Length = 334
Score = 29.1 bits (62), Expect = 2.3
Identities = 25/87 (28%), Positives = 38/87 (43%)
Frame = +3
Query: 30 VKDTAEQFFAP*LW*I*KTMTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFL 209
+ D ++ W + + + L K +DL TK +K +N E RL +H +
Sbjct: 134 IDDFVQEMEMTRFWPLERREIIAEVLLKNVDLKTKYHCPEKYENEE---RLADHKAQCSF 190
Query: 210 HAVKYEAQGERAKESIRAKCLQYLDRA 290
V G RAK S+R C+Q D A
Sbjct: 191 RPVTCPNDGCRAKVSVR--CMQDHDSA 215
>12_01_0668 -
5682664-5682916,5684542-5684576,5684643-5684693,
5685362-5685505,5685981-5686265,5686369-5686441,
5687123-5687343,5687447-5687524,5687626-5687688,
5688700-5688900
Length = 467
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 92 CHCFLNSPQLRCKKLLSCIFDAIIRCYY 9
CHC+++ ++ K LSC+ + CYY
Sbjct: 400 CHCYISQQEI---KRLSCMAKCALACYY 424
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 99 NTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESI 257
N + K I+L E++ K EEA R Y+ E HA + A GE+ ++
Sbjct: 605 NLVNKEIELYNTMLEKEGTKGEEEARRAYKAAREESDHAAEI-AAGEKVSSAL 656
>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
Length = 364
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +3
Query: 30 VKDTAEQFFAP*LW*I*KTMTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFL 209
+ D ++ W + + + L K +DL TK +K YE RL +H +
Sbjct: 163 IDDFVQEMEMTRFWPLERREAIAEVLLKNVDLKTKYHCPEK---YENEQRLADHKAQCSF 219
Query: 210 HAVKYEAQGERAKESIR 260
V G RAK S+R
Sbjct: 220 RPVTCPNDGCRAKVSVR 236
>08_01_0462 +
4072369-4072630,4072732-4072814,4072937-4073020,
4073509-4073584,4073712-4073784,4073878-4073951,
4074158-4074251,4074374-4074443
Length = 271
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 123 LVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYE 227
+V +ATE N +EE Y HG + L A YE
Sbjct: 125 VVAEATECTNNDYFEEVYEYYAHGDAWRLPAGAYE 159
>01_06_0155 - 27057150-27057425
Length = 91
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +3
Query: 90 TSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIR 260
+SS+ ++++ ++ ++++ NK +EEAL Y G H V G + + +R
Sbjct: 6 SSSSRNSNSVNMDSEWSKKE-NKLFEEALAYYGEGAPDLFHKVSRAMGGTKTADEVR 61
>07_03_1474 -
26766078-26766536,26766634-26766885,26767201-26767401,
26767986-26768156,26768249-26768433,26768526-26768851,
26769430-26770631
Length = 931
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 147 DKNKNYEEALRLYEHGVEYF 206
++NK +E+A ++YE GV+ F
Sbjct: 571 EENKYFEDAFKVYERGVKIF 590
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 111 KAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESI 257
KAI K T+ + N ++ LY+HG +YF V+ A A E +
Sbjct: 753 KAIKATGKGTKPE-NAREDKVDNLYKHGHQYFADIVEMGATDPDAMEYV 800
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,031,496
Number of Sequences: 37544
Number of extensions: 122189
Number of successful extensions: 353
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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