Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326B12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 99 1e-21
CU457740-9|CAM36339.1| 357|Caenorhabditis elegans Hypothetical ... 31 0.50
U64852-4|AAB04967.1| 192|Caenorhabditis elegans Galectin protei... 29 1.5
AB038501-1|BAB11966.1| 192|Caenorhabditis elegans galectin LEC-... 29 1.5
Z82077-5|CAB63333.1| 783|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z35663-14|CAA84733.1| 805|Caenorhabditis elegans Hypothetical p... 27 6.2
Z48621-8|CAA88548.2| 180|Caenorhabditis elegans Hypothetical pr... 27 8.1
AB038499-1|BAB11964.1| 180|Caenorhabditis elegans galectin LEC-... 27 8.1
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 99 bits (238), Expect = 1e-21
Identities = 55/126 (43%), Positives = 71/126 (56%)
Frame = +3
Query: 105 LQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLD 284
LQKAI+LVTKATEED Y++ALRLY+ +EYFLHA+KYE+QG++ + +IR K QYL+
Sbjct: 6 LQKAIELVTKATEEDTAGRYDQALRLYDQAIEYFLHAIKYESQGDKQRNAIRDKVGQYLN 65
Query: 285 RAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGKLEGAIVVEKPHVK 464
RA Q KL GAIV+EKP+VK
Sbjct: 66 RA---------EQIKTHLKDGKTQKKPVKDGKDDSDEDEDKKKFQDKLSGAIVMEKPNVK 116
Query: 465 WSDVAG 482
W+D+AG
Sbjct: 117 WTDIAG 122
>CU457740-9|CAM36339.1| 357|Caenorhabditis elegans Hypothetical
protein C50E10.9 protein.
Length = 357
Score = 31.1 bits (67), Expect = 0.50
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -3
Query: 300 LIFQLYQDIEGILHEYFLLPFHLGPHILLHEENTLHHAHINVMLLHSFCSCPL-Q*P**Q 124
LIFQL Q +E + Y L + +G L + HH + + SC L + P
Sbjct: 67 LIFQLCQWLEILCARYLLFDYLIGYKFLGDKSKIYHHFWTDKLEEMVQISCFLEEWPLFL 126
Query: 123 DQ*LFVRYLMMSLFFKFTTTKVQKIAQLYL 34
L+ + LFF F+ + + IA YL
Sbjct: 127 GGFLYTHHFASCLFFLFSVSMERAIASYYL 156
>U64852-4|AAB04967.1| 192|Caenorhabditis elegans Galectin protein
10 protein.
Length = 192
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 261 HEYFLLPFHLGPHILLHEENTLHHAHINVM 172
H+ F + GP+++LH HH H+ VM
Sbjct: 36 HKNFAVELLSGPNVVLHVNFRFHHEHVVVM 65
>AB038501-1|BAB11966.1| 192|Caenorhabditis elegans galectin LEC-10
protein.
Length = 192
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 261 HEYFLLPFHLGPHILLHEENTLHHAHINVM 172
H+ F + GP+++LH HH H+ VM
Sbjct: 36 HKNFAVELLSGPNVVLHVNFRFHHEHVVVM 65
>Z82077-5|CAB63333.1| 783|Caenorhabditis elegans Hypothetical
protein W09C5.7 protein.
Length = 783
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 84 TMTSSNTLQKAIDLVTKATEEDKNKNYEE 170
T T QKAI++VT TE D+N EE
Sbjct: 503 THTKDAQRQKAINIVTGQTEADENAEEEE 531
>Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Frame = +3
Query: 120 DLVTKATEEDKNKNYEEALRLYEHGV--------EYFLHAVKYEAQGE-RAKESIRAKCL 272
D++ +A + YEEA+ L++H + YF A Y+ +GE A E+ R K +
Sbjct: 453 DILDRADNLVEKHQYEEAMELFDHVIAVYPASTRAYFGKARAYDIRGEIEADETDRDKAI 512
Query: 273 QYLDR 287
+ ++
Sbjct: 513 EIYEK 517
>Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Frame = +3
Query: 120 DLVTKATEEDKNKNYEEALRLYEHGV--------EYFLHAVKYEAQGE-RAKESIRAKCL 272
D++ +A + YEEA+ L++H + YF A Y+ +GE A E+ R K +
Sbjct: 453 DILDRADNLVEKHQYEEAMELFDHVIAVYPASTRAYFGKARAYDIRGEIEADETDRDKAI 512
Query: 273 QYLDR 287
+ ++
Sbjct: 513 EIYEK 517
>Z35663-14|CAA84733.1| 805|Caenorhabditis elegans Hypothetical
protein T04A8.16 protein.
Length = 805
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 108 QKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVK 221
Q A +L KA D+ K YEEA+ Y L V+
Sbjct: 7 QSAFELSQKAVYYDQGKKYEEAIFCYTEAGNQLLRLVQ 44
>Z48621-8|CAA88548.2| 180|Caenorhabditis elegans Hypothetical
protein R07B1.10 protein.
Length = 180
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 261 HEYFLLPFHLGPHILLHEENTLHHAHINVM 172
H+ F + GPHI+LH H HI M
Sbjct: 36 HKDFSVELLSGPHIVLHVNFRFEHDHIVAM 65
>AB038499-1|BAB11964.1| 180|Caenorhabditis elegans galectin LEC-8
protein.
Length = 180
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 261 HEYFLLPFHLGPHILLHEENTLHHAHINVM 172
H+ F + GPHI+LH H HI M
Sbjct: 36 HKDFSVELLSGPHIVLHVNFRFEHDHIVAM 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,323,064
Number of Sequences: 27780
Number of extensions: 122233
Number of successful extensions: 396
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -