Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326B10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      29   0.32 
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    29   0.32 
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   3.0  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    25   5.2  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   6.8  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   6.8  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 147 WTVGTTRP*HRLHSRVPDHARCSAAATLASRL 242
           +T  T RP  RLH+ +  +A  SA+  LASRL
Sbjct: 190 YTTETIRPHVRLHNSLSTNAALSASVVLASRL 221


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 306 SSVKNRKIELSAVDEM--LATRSPSGWR-GLRLLSTGHGRELVSGGG 175
           +S +NRK+  S V  +  + T   S WR GLR ++ GH   LV  GG
Sbjct: 60  TSQENRKLSPSEVGPLSIVDTSDSSWWRTGLREIARGHVAALVLAGG 106


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 262 DVSDAVPKRLARVAAAEHRAWSGTRE 185
           +V    PK+LAR A  ++ AWS  +E
Sbjct: 499 EVEKTEPKKLARPAKIKNEAWSKQKE 524


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 2   IFLIWLKNIYKMSQTVINRRQHLLWV 79
           + L+ L N+YK+  T +NR   +L V
Sbjct: 136 VILVGLSNLYKLFSTTMNRPPSILLV 161


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +3

Query: 96  GSGKSKRTGRSRVCSEGWTVGTTRP*HRLHSRVPDHARCSAAATLASRLGTASLTSH 266
           GS   K+  ++    +   +G T P   + S++P H R ++    + +  + SLTS+
Sbjct: 34  GSLLKKKIRKTEFRIDNGLLGNTSPIINVESKIPFHRRANSTPEESRKRVSFSLTSN 90


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 59  RQHLLWVISALY 94
           R+H LWVIS+LY
Sbjct: 109 RKHTLWVISSLY 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,930
Number of Sequences: 5004
Number of extensions: 34696
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)