Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326B10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831 32 0.32
07_01_0636 + 4761858-4762421,4763596-4763819,4763961-4764309,476... 31 0.56
08_02_0222 + 14446967-14448310 30 0.98
12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368 29 2.3
05_06_0177 + 26164873-26165113,26165416-26165762 29 2.3
09_02_0136 + 4747985-4748419 28 4.0
07_03_0132 - 14011468-14012124 28 4.0
07_03_0131 - 14004278-14004712 28 4.0
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57... 28 5.2
03_02_0751 + 10919768-10920282,10920518-10920710,10920796-109209... 28 5.2
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 27 6.9
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 27 6.9
06_01_0329 + 2383305-2384057,2385423-2385469,2386383-2386815,238... 27 9.1
02_05_0686 - 30900748-30902167,30903442-30904742 27 9.1
>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
Length = 757
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = -3
Query: 264 EMLATRSPSGWRGLRLLSTGHGRELVSGGGVRGALFPRSTLHYKPGTG 121
EMLA PSG LL+ GR GGG RG L + T + +P +G
Sbjct: 160 EMLAMLGPSGSGKTTLLTALGGRHGGGGGGGRGMLSGKITYNGQPFSG 207
>07_01_0636 +
4761858-4762421,4763596-4763819,4763961-4764309,
4764648-4765331
Length = 606
Score = 31.1 bits (67), Expect = 0.56
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = -3
Query: 336 FYRAASSDSTSSVKNRKIELSAVDEMLATRSPSGWRGLRLLSTGHGRELV------SGGG 175
F+ ++SS S+SS + + +A + R PS W G G LV SGGG
Sbjct: 57 FFLSSSSSSSSSSSSTLVRPAASSHAASLRKPSSWGGGNGGGGGGEHLLVTSSSFGSGGG 116
Query: 174 VRGALFPRST 145
RG+ ST
Sbjct: 117 ARGSWSRNST 126
>08_02_0222 + 14446967-14448310
Length = 447
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 234 WRGLRLLSTGHGRELVSGGGVRGALFPRSTLHYKPGTGRC 115
W RL TG+ R GG +F + L+Y G GRC
Sbjct: 90 WITQRLERTGNLRLAGGGGSGEAVVFEKHRLNYHAGEGRC 129
>12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368
Length = 487
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = -3
Query: 282 ELSAVDEMLATRSPSGWRGLRLLST----GHGRELVSGGGVRGALFPRSTLHYKPGT 124
EL+A++++LA R + R L+ S+ G GR + G G FP S+ H+ P T
Sbjct: 132 ELAALEDLLAKRD-AALRALQSSSSSRGGGGGRGVGGGSGRATPSFPGSSPHHYPST 187
>05_06_0177 + 26164873-26165113,26165416-26165762
Length = 195
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 177 GVRGALFPRSTLHYKPGTG 121
GVRG P+STL + PGTG
Sbjct: 160 GVRGVYRPKSTLMFGPGTG 178
>09_02_0136 + 4747985-4748419
Length = 144
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -3
Query: 324 ASSDSTSSVKNRKIELSAVDEMLATR---SPSGWRGLRLLSTGHGRELVSGGG 175
A+S + + R++E + +E R S G RG R S G G +GGG
Sbjct: 48 ATSTGAQAGRQRRLEAAGAEEREGRRRERSSGGLRGKRRASRGRGGHCDAGGG 100
>07_03_0132 - 14011468-14012124
Length = 218
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -3
Query: 324 ASSDSTSSVKNRKIELSAVDEMLATR---SPSGWRGLRLLSTGHGRELVSGGG 175
A+S + + R++E + +E R S G RG R S G G +GGG
Sbjct: 48 ATSTGAQAGRQRRLEAAGAEEREGRRRERSSGGLRGKRRASRGRGGHCDAGGG 100
>07_03_0131 - 14004278-14004712
Length = 144
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -3
Query: 324 ASSDSTSSVKNRKIELSAVDEMLATR---SPSGWRGLRLLSTGHGRELVSGGG 175
A+S + + R++E + +E R S G RG R S G G +GGG
Sbjct: 48 ATSTGAQAGRQRRLEAAGAEEREGRRRERSSGGLRGKRRASRGRGGHCDAGGG 100
>08_01_0081 -
574119-575204,575794-576191,576321-576382,576581-576653,
576754-576824,576961-577148,577230-577377,577465-577503,
577601-577656,577745-577798,577900-578003,578117-578217,
578726-578796,578912-578968,579306-579422,579653-579682
Length = 884
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 253 DAVPKRLARVAAAEHRAW-SGTREWRR--CQGRVVPTVHP 143
DA +RLA A EH W S EW+R Q + +P +P
Sbjct: 333 DAAAERLAHDALLEHMKWESQIEEWQRPILQDKSLPEWYP 372
>03_02_0751 +
10919768-10920282,10920518-10920710,10920796-10920986,
10921148-10921306,10921390-10921720
Length = 462
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 64 APSLGDFGAVLGAENPNAPAGPGFVVKGGPWEQRAPDTA 180
AP+ GD G+ +GAE A G G +G + D+A
Sbjct: 15 APANGDSGSAMGAEGAPAGGGDGNSAEGENTTKEVADSA 53
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 261 MLATRSPSGWRGLRLLSTGHGRELVSGGGVR 169
M+A+R+P L L++ GHG+ V+G G R
Sbjct: 1 MIASRTPVSLHSL-LVAGGHGKRCVAGAGGR 30
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 213 STGHGRELVSGGGVRGALFPRSTLHYKPG 127
S+G RE +SGG V A S LH PG
Sbjct: 20 SSGRRREWLSGGAVASAARTTSLLHPLPG 48
>06_01_0329 +
2383305-2384057,2385423-2385469,2386383-2386815,
2386852-2387034,2388388-2389044
Length = 690
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 189 VSGGGVRGALFPRSTLHYKPGTGRCVWIFRSQY 91
V GGG GA+ +H+ G+ VW F Y
Sbjct: 420 VGGGGAGGAVAVGVAIHHGVADGQSVWQFIKAY 452
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 324 ASSDSTSSVKNRKIELSAVDEMLATRSPSGWRGLRLLSTGHGRELVSGGG 175
+SS +SS K I ++ V L++ + SG L G REL GG
Sbjct: 66 SSSPPSSSGKRSDIAVAVVSTALSSFAVSGLAFFLFLRHGKKRELTEAGG 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,833,214
Number of Sequences: 37544
Number of extensions: 272999
Number of successful extensions: 1103
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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