Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326B10f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein ... 48 3e-05
BC113120-1|AAI13121.1| 589|Homo sapiens HDLBP protein protein. 48 3e-05
BC014305-1|AAH14305.2| 898|Homo sapiens HDLBP protein protein. 48 3e-05
BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotei... 48 3e-05
AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein. 48 3e-05
AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens ... 45 2e-04
U94703-1|AAC51321.1| 372|Homo sapiens mitochondrial DNA polymer... 32 1.4
AK097864-1|BAC05188.1| 193|Homo sapiens protein ( Homo sapiens ... 31 2.4
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 30 4.3
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 30 4.3
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein. 30 4.3
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 30 4.3
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 30 4.3
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 30 4.3
BC142963-1|AAI42964.1| 531|Homo sapiens SMARCD2 protein protein. 29 7.5
AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein. 29 7.5
AK026486-1|BAB15491.1| 134|Homo sapiens protein ( Homo sapiens ... 29 7.5
AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo ... 29 7.5
>M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein
binding protein protein.
Length = 1268
Score = 47.6 bits (108), Expect = 3e-05
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 HLLNLAEEYLQDVADRYQPPAAPSLGDFGAVLGAENPNAPAGPGFVVKGGPW----EQRA 168
H+LNL EEYL DV D + +L + E AP+ GFVV+ PW ++A
Sbjct: 1189 HILNLEEEYLADVVD------SEALQVYMKPPAHEEAKAPS-RGFVVRDAPWTASSSEKA 1241
Query: 169 PDTASTHEFPTMPGXXXXXXXXXXWGPRR 255
PD +S+ EFP+ WGP+R
Sbjct: 1242 PDMSSSEEFPSF--GAQVAPKTLPWGPKR 1268
>BC113120-1|AAI13121.1| 589|Homo sapiens HDLBP protein protein.
Length = 589
Score = 47.6 bits (108), Expect = 3e-05
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 HLLNLAEEYLQDVADRYQPPAAPSLGDFGAVLGAENPNAPAGPGFVVKGGPW----EQRA 168
H+LNL EEYL DV D + +L + E AP+ GFVV+ PW ++A
Sbjct: 510 HILNLEEEYLADVVD------SEALQVYMKPPAHEEAKAPS-RGFVVRDAPWTASSSEKA 562
Query: 169 PDTASTHEFPTMPGXXXXXXXXXXWGPRR 255
PD +S+ EFP+ WGP+R
Sbjct: 563 PDMSSSEEFPSF--GAQVAPKTLPWGPKR 589
>BC014305-1|AAH14305.2| 898|Homo sapiens HDLBP protein protein.
Length = 898
Score = 47.6 bits (108), Expect = 3e-05
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 HLLNLAEEYLQDVADRYQPPAAPSLGDFGAVLGAENPNAPAGPGFVVKGGPW----EQRA 168
H+LNL EEYL DV D + +L + E AP+ GFVV+ PW ++A
Sbjct: 819 HILNLEEEYLADVVD------SEALQVYMKPPAHEEAKAPS-RGFVVRDAPWTASSSEKA 871
Query: 169 PDTASTHEFPTMPGXXXXXXXXXXWGPRR 255
PD +S+ EFP+ WGP+R
Sbjct: 872 PDMSSSEEFPSF--GAQVAPKTLPWGPKR 898
>BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotein
binding protein (vigilin) protein.
Length = 1268
Score = 47.6 bits (108), Expect = 3e-05
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 HLLNLAEEYLQDVADRYQPPAAPSLGDFGAVLGAENPNAPAGPGFVVKGGPW----EQRA 168
H+LNL EEYL DV D + +L + E AP+ GFVV+ PW ++A
Sbjct: 1189 HILNLEEEYLADVVD------SEALQVYMKPPAHEEAKAPS-RGFVVRDAPWTASSSEKA 1241
Query: 169 PDTASTHEFPTMPGXXXXXXXXXXWGPRR 255
PD +S+ EFP+ WGP+R
Sbjct: 1242 PDMSSSEEFPSF--GAQVAPKTLPWGPKR 1268
>AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein.
Length = 1268
Score = 47.6 bits (108), Expect = 3e-05
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 HLLNLAEEYLQDVADRYQPPAAPSLGDFGAVLGAENPNAPAGPGFVVKGGPW----EQRA 168
H+LNL EEYL DV D + +L + E AP+ GFVV+ PW ++A
Sbjct: 1189 HILNLEEEYLADVVD------SEALQVYMKPPAHEEAKAPS-RGFVVRDAPWTASSSEKA 1241
Query: 169 PDTASTHEFPTMPGXXXXXXXXXXWGPRR 255
PD +S+ EFP+ WGP+R
Sbjct: 1242 PDMSSSEEFPSF--GAQVAPKTLPWGPKR 1268
>AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens cDNA
FLJ45936 fis, clone PLACE7004103, highly similar to
Vigilin. ).
Length = 847
Score = 44.8 bits (101), Expect = 2e-04
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 HLLNLAEEYLQDVADRYQPPAAPSLGDFGAVLGAENPNAPAGPGFVVKGGPW----EQRA 168
++LNL EEYL DV D + +L + E AP+ GFVV+ PW ++A
Sbjct: 768 NILNLEEEYLADVVD------SEALQVYMKPPAHEEAKAPS-RGFVVRDAPWTASSSEKA 820
Query: 169 PDTASTHEFPTMPGXXXXXXXXXXWGPRR 255
PD +S+ EFP+ WGP+R
Sbjct: 821 PDMSSSEEFPSF--GAQVAPKTLPWGPKR 847
>U94703-1|AAC51321.1| 372|Homo sapiens mitochondrial DNA polymerase
accessory subunit precursor protein.
Length = 372
Score = 31.9 bits (69), Expect = 1.4
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3
Query: 183 GGGVRGALFPRSTLHYKP 130
GGGV GA+FP LH+KP
Sbjct: 5 GGGVHGAVFPVDALHHKP 22
>AK097864-1|BAC05188.1| 193|Homo sapiens protein ( Homo sapiens
cDNA FLJ40545 fis, clone THYMU2001195. ).
Length = 193
Score = 31.1 bits (67), Expect = 2.4
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 258 LATRSPSGWRGLRLLSTGHGRELVSGGGVRGAL-FPRSTLHYKP 130
LA P GW +RLL R L G AL PR+T H++P
Sbjct: 74 LAVAGPQGWPAVRLLREAPLRGLGDPGARLSALEGPRATRHHRP 117
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 200 VGNS*VEAVSGARCSHGPPFTTN-PGPAGAFGFSAPS 93
+GN GAR S GPP T PG AG G PS
Sbjct: 853 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 889
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 200 VGNS*VEAVSGARCSHGPPFTTN-PGPAGAFGFSAPS 93
+GN GAR S GPP T PG AG G PS
Sbjct: 853 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 889
>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
Length = 1040
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 200 VGNS*VEAVSGARCSHGPPFTTN-PGPAGAFGFSAPS 93
+GN GAR S GPP T PG AG G PS
Sbjct: 429 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 465
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 200 VGNS*VEAVSGARCSHGPPFTTN-PGPAGAFGFSAPS 93
+GN GAR S GPP T PG AG G PS
Sbjct: 853 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 889
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 200 VGNS*VEAVSGARCSHGPPFTTN-PGPAGAFGFSAPS 93
+GN GAR S GPP T PG AG G PS
Sbjct: 850 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 886
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 200 VGNS*VEAVSGARCSHGPPFTTN-PGPAGAFGFSAPS 93
+GN GAR S GPP T PG AG G PS
Sbjct: 856 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 892
>BC142963-1|AAI42964.1| 531|Homo sapiens SMARCD2 protein protein.
Length = 531
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 55 PPAAPSLGDFGAVLGAENPNAPAGPGFV 138
PP +P G A LGA+ P PAGPG +
Sbjct: 12 PPLSPGGGAVAAALGAQPP--PAGPGML 37
>AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein.
Length = 4186
Score = 29.5 bits (63), Expect = 7.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 84 RRCTGSGKSKRTGRSRVCSEGWTVGT 161
+R G+G KR G +R C E W G+
Sbjct: 258 QRNAGTGSRKRVGTARCCGELWATGS 283
>AK026486-1|BAB15491.1| 134|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22833 fis, clone KAIA4266. ).
Length = 134
Score = 29.5 bits (63), Expect = 7.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 240 SGWRGLRLLSTGHGRELVSGG--GVRGALFPRSTLHYKPG 127
S W+G L TG G EL G G A R ++HY PG
Sbjct: 80 SMWKGCLTLYTGRGGELQKIGDLGAVQAAAMRDSIHYYPG 119
>AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo 1
protein.
Length = 3312
Score = 29.5 bits (63), Expect = 7.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 84 RRCTGSGKSKRTGRSRVCSEGWTVGT 161
+R G+G KR G +R C E W G+
Sbjct: 188 QRNAGTGSRKRVGTARCCGELWATGS 213
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,610,298
Number of Sequences: 237096
Number of extensions: 1439962
Number of successful extensions: 4893
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4863
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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