Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326B09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0329 + 24449574-24449633,24450261-24450320,24450510-244505... 30 1.3
12_01_0167 - 1250619-1250699,1250824-1250910,1250992-1251110,125... 29 1.7
05_04_0267 - 19570478-19571122 29 1.7
03_05_0398 + 23790257-23790323,23791116-23791339,23792208-237922... 29 1.7
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 29 2.3
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 29 2.3
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421... 29 3.0
03_02_0172 - 6131559-6131990 27 6.9
05_03_0437 - 14012632-14012838 27 9.1
04_03_0435 + 15902356-15902574,15902680-15902777,15905100-159051... 27 9.1
>04_04_0329 +
24449574-24449633,24450261-24450320,24450510-24450562,
24450913-24450973,24451481-24451666,24451877-24451984,
24452196-24453418,24453571-24454405
Length = 861
Score = 29.9 bits (64), Expect = 1.3
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = -3
Query: 387 FTTTS--A*PTWRASSLPSKLLRTYSKALVLSKALNILSKFPLRGRGKGLCSGLDTGPQE 214
FT TS + P+ + SL S + + V+ K+++ + F LR + KGL + P+E
Sbjct: 286 FTNTSMCSSPSCSSRSLSSSI-DLHGNGHVIEKSISRVGSFNLR-QIKGLSGSMPLPPEE 343
Query: 213 VRLPRAVGPHRYSAILSSHQT 151
+R P ++ I++S QT
Sbjct: 344 LRCPISLQLMHDPVIIASGQT 364
>12_01_0167 -
1250619-1250699,1250824-1250910,1250992-1251110,
1251200-1251478,1252246-1252660
Length = 326
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 475 LFSVEVFVITRSLGSQRAVGSLVAAAHLPVHHYIRMTYMASLLLAVQVASDVLEGIGPFE 296
LF + + LG +GS+V A +PV +TY+ + V+VA+++ G G
Sbjct: 108 LFLSWLLTVQFHLGLAGVMGSMVIAYWIPVFDKFHLTYLYMYISRVRVANEL--GAGSAR 165
Query: 295 SVEYSV-KVPTERAREGFV 242
++++ V T GF+
Sbjct: 166 RAKFAIFNVVTTSFSIGFM 184
>05_04_0267 - 19570478-19571122
Length = 214
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 207 LPRAVGPHRYSAILSSHQTSAGATRHIEANLQ*RRQRSPRTSMHYNHRT 61
LP PH+ +A SS + + H + RR+R RTS + + RT
Sbjct: 29 LPSIAAPHQRAAPTSSAEATEEPVAHHKNEADPRRRRPRRTSRYESFRT 77
>03_05_0398 +
23790257-23790323,23791116-23791339,23792208-23792275,
23794738-23794980,23795108-23795237,23797235-23797954
Length = 483
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 176 LYRCGPTALGSRTSWGP-VSSPEHKPFPRPLSGNFDRIFNAFERTN 310
LYR G TA G+R+ W ++SP R L F + +A TN
Sbjct: 436 LYRGGATACGARSIWDDMIASPARADIQRELREAFRSVEHAPPNTN 481
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = -1
Query: 461 SLRHHKEPGQPAXXXXXXXXXXXXXSPLHPHDLHGEPPPCRPS 333
S HH EP P+ + +H D H PPP P+
Sbjct: 125 SFHHHPEPPSPSPSAPSYPSIADGLANMHVSDRHDYPPPPSPA 167
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = -2
Query: 355 SLLLAVQVASDVLEGIGPFESVEYSVKV------PTERAREGFVFRTRHRAPGGAATQSS 194
SLL + ++V+ GP ES E ++ P +R+ E HRAPG A
Sbjct: 609 SLLNRITTGNNVVGVPGPLESPEIKPRLFGVTAEPQQRSTEAPSLHENHRAPGSVAKTKR 668
Query: 193 RPA 185
P+
Sbjct: 669 APS 671
>03_04_0091 +
17241555-17241602,17241685-17241822,17241901-17242198,
17242281-17242513,17242632-17242827,17242911-17243032,
17243100-17243165,17243373-17243436,17243851-17244176
Length = 496
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = -1
Query: 203 PEQSARTDTAPF*VLTRPQRARLVISKQIYSNVGSAPLALQCTIITELSLTEI 45
P Q + + V P A+ ++K+ Y+++ +ALQ ++ E+SLT +
Sbjct: 207 PVQMTKEEPRKISVAAPPPPAQKDVTKKSYASITLTMIALQVKVMKEVSLTPV 259
>03_02_0172 - 6131559-6131990
Length = 143
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 509 AETAASPASTGSFLCRSLRHHKEPGQPA 426
A+ + P + SFLC+S + PG PA
Sbjct: 30 ADAVSRPPRSSSFLCQSSSPSEPPGSPA 57
>05_03_0437 - 14012632-14012838
Length = 68
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 189 GRLLWVAAPPGARCR 233
GR LW+ PP RCR
Sbjct: 54 GRKLWIELPPALRCR 68
>04_03_0435 +
15902356-15902574,15902680-15902777,15905100-15905163,
15906707-15907045
Length = 239
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 215 SWGPVSSPEHKPFPRPLSGNFDRIFNAFERTN 310
S G + EHK PR GN ++ FER N
Sbjct: 117 SCGILKGKEHKLIPRFQPGNIEKNAEIFERVN 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,994,669
Number of Sequences: 37544
Number of extensions: 336502
Number of successful extensions: 1233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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