Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326B09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41034-4|AAY43995.1|  385|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical...    27   6.2  
Z75548-2|CAA99910.1|  143|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    27   8.1  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   8.1  

>U41034-4|AAY43995.1|  385|Caenorhabditis elegans Hypothetical
           protein M02D8.7 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 21  VRLNIFLINFGE*EFCDYSALKCEGSAADVTVNLLRYDESRP 146
           +RLN+  I+F +  F  Y  +K E     + ++ LR+D S P
Sbjct: 291 IRLNLKGIDFSQVRFFIYLFIKTETLQRQIFISALRHDWSDP 332


>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
           protein Y67A10A.3 protein.
          Length = 1237

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 377 VVVNRKMSSSYERADCALAAQAPCDD 454
           V+V RKMS  YE+++   AA +  DD
Sbjct: 589 VIVLRKMSEVYEKSEIVSAAASSADD 614


>Z75548-2|CAA99910.1|  143|Caenorhabditis elegans Hypothetical
           protein R90.2 protein.
          Length = 143

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 103 PTLL*ICFDM--TSRAR*GLVRTQNGAVSVRADCSG*P 210
           PT L + F +  TS A  G+ RTQ+ AVS R  C+G P
Sbjct: 5   PTTLFLLFALVSTSYALLGVGRTQSVAVSGRVICNGQP 42


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
 Frame = -2

Query: 490  LRVQDLFSVEVFV---ITRSLGSQRAVGSLVAAAHLPVHHYIRMTYMASLLLAVQVASDV 320
            + +++ F ++  +   + R  GS     S++    L     ++     +    +  + D 
Sbjct: 3501 VEMENTFKIQQIIFDTVVRKFGSDEERASIINLIGLLTSVNLKAAIQVASFERLPDSLDS 3560

Query: 319  LEGIGPFESVEYSVKVPTERAREGFVFRTRH 227
               I P   ++  V+ PTE+  +GF  + RH
Sbjct: 3561 TASITPVFKIQEHVRQPTEQVVQGFWSKERH 3591


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
 Frame = -2

Query: 490  LRVQDLFSVEVFV---ITRSLGSQRAVGSLVAAAHLPVHHYIRMTYMASLLLAVQVASDV 320
            + +++ F ++  +   + R  GS     S++    L     ++     +    +  + D 
Sbjct: 3501 VEMENTFKIQQIIFDTVVRKFGSDEERASIINLIGLLTSVNLKAAIQVASFERLPDSLDS 3560

Query: 319  LEGIGPFESVEYSVKVPTERAREGFVFRTRH 227
               I P   ++  V+ PTE+  +GF  + RH
Sbjct: 3561 TASITPVFKIQEHVRQPTEQVVQGFWSKERH 3591


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,132,312
Number of Sequences: 27780
Number of extensions: 259497
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)