Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326B08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    29   0.42 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    28   0.73 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   0.73 
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    27   1.3  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.3  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    27   1.3  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    27   1.7  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.2  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    26   3.0  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   3.9  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   5.2  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   5.2  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   5.2  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   6.8  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    25   9.0  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   9.0  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   9.0  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   9.0  

>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 90  STQLRNLSRTSSNILISSQFNIVFSNLETALLCLSFQLEDITNSILFSKLNIIHPSIL 263
           S    + SR   N L++        +   ALLC   QLE++ +  ++ +  +IH SIL
Sbjct: 109 SADFLDWSRVRLNRLVADYMMANGYHGAAALLCKDSQLENLVDLGIYKRYQLIHDSIL 166


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
 Frame = +3

Query: 9   STIQTFNETFNVIQENEEKLNVAIEKLSTQLRNLSRTSSNI--LISSQFNIVFSNL-ETA 179
           +TI+  ++TF +++  + K  + +   S  L +    SSN+   + S  +I +S +   +
Sbjct: 600 ATIKDESKTFELLKNIQRKYELILSGSSVDLPSAEFLSSNLTDALYSGSSICYSLIFSHS 659

Query: 180 LLCLSFQLEDITNSILFSKLNIIHPS 257
           LL L+FQ  DI + +    L +  PS
Sbjct: 660 LLDLTFQYVDIASLLSQFLLCVYDPS 685


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
 Frame = +3

Query: 81  EKLSTQLRNLS-RTSSNILISSQFNIVFSNLETALLCLSFQLEDITNSILFSKLNIIHPS 257
           E LS+QL  L+    + +  +++ +   ++L+T  LC +FQ E +  S++  K N  + S
Sbjct: 549 EHLSSQLSTLAAEKEAAVATNNELSESKNSLQT--LCNAFQ-EKLAKSVMQLKENEQNFS 605

Query: 258 ILTPS-----QLHQELVENHRHLPSDLELATS 338
            L  S     + HQEL  NH+ +   L+  +S
Sbjct: 606 SLDTSFKKLNESHQELENNHQTITKQLKDTSS 637


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 288 LVENHRHLPSDLELATSLD-LKHIHTLMKISNVISYFFNDKIM 413
           + ++H ++P D+ELA  +  LKH+ ++  +S  I Y F  KI+
Sbjct: 173 VAKSHSNIPKDIELACVIRYLKHLKSVPNVSYYI-YKFPFKIL 214


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 105 NLSRTSSNILISSQFNIVFSNLETALLCLSFQLE 206
           +L +T  N+++ S    V  NLET + CLS  L+
Sbjct: 627 SLFKTLGNLVVDSNLASVKFNLETYIYCLSVVLD 660


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 321 LELATSLDLKHIHTLMKISNVISYFFNDKIMF 416
           LE++T LD K I  L +    +SY F+DK ++
Sbjct: 15  LEISTYLDYKDIVHLSETCKSLSYVFDDKTIW 46


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 196 KDKHKRAVSRLLNTILNWELINILLDVRDKFLN*VESFSIATLSFSSF 53
           K+K K  ++  L T+ NW  IN  L    KF    ESF     S  SF
Sbjct: 148 KEKWKNELTEKLKTLFNWPAINPNLKESSKF----ESFFGFVRSIQSF 191


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = -2

Query: 349 FKSRLVANSKSLGKCR*FSTSSWCN*DGVRIDGCIMFNLLKRMEFVISSNWKDKHKRAVS 170
           FKS L  N  +L K   F +      DGV +    +  ++ + +    + +K+K+ + VS
Sbjct: 243 FKSSLYENLSTLFKSDEFWSLVSSPQDGVTVSLSDLLLIILKYDKPFVTQYKEKYFKRVS 302

Query: 169 RLLNTILNW---ELINILLDVRDKFLN*VESFS 80
           R+++ + +     ++ +L ++   F N V  F+
Sbjct: 303 RMISRLTSLTCVPMLRLLSNMISNFPNEVHQFA 335


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
 Frame = +3

Query: 63  KLNVAIEKLSTQL--RNLSRTSSNILISSQFNIVFSNLETALLCLSF--QLEDITNSILF 230
           K+++AI   S ++     +  +S  L++S+    + +   A++   +  Q ED+ NS + 
Sbjct: 23  KVSIAISAFSVKVPCEGAANCNSVRLVNSKEPEKYVSDANAIVSFLYWKQEEDLFNSFIS 82

Query: 231 SKLNIIHPSIL--TPSQLHQELVENHRHLPSDLE 326
           SKL+I+    L  TP     +  E+  +L S LE
Sbjct: 83  SKLSILDWEALQFTPKAYTAKTKEDFAYLLSQLE 116


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 12  TIQTFNETFNVIQENEEKLNVAIEKLSTQLRNLSRTSSNIL 134
           ++Q+   T  VI   +  +  +IEK ST +RN + T+  ++
Sbjct: 231 SLQSMPPTNGVIPGAQPSIEASIEKESTSIRNSTVTNDRVV 271


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 250 CIMFNLLKRMEFVISSNWKDKHKRAVSRL 164
           CI+F +L+      S NW+ +  R V+RL
Sbjct: 617 CIIFTVLEIAAEEYSPNWESEELRLVNRL 645


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 15  IQTFNETFNVIQENEEKLNVAIEKLSTQLRNLSRT 119
           ++ F+E+ N +Q+ E++L   +EK +  + +L  T
Sbjct: 596 LRRFHESINKLQDREKELTSNLEKKNLVISSLRET 630


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 102 RNLSRTSSNILISSQFNIVF---SNLETALLCLSFQLEDITNSI 224
           +N+S  S + L SSQF  +F   SN ET       +LED+   +
Sbjct: 806 KNISMKSYHSLFSSQFRQLFEELSNKETQSKLYQKRLEDLNEEL 849


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
 Frame = +3

Query: 162  SNLETALLCLSFQLEDITNSILFSKLNIIHPSILTPSQLHQE----LVENHRHLPSDLEL 329
            S L   L CLS  L DI  S+  S LN+IH S+   + L  E    L+ +   +P D+  
Sbjct: 904  SILPLLLQCLS--LSDI--SVKLSTLNVIHTSVKELTSLLTEYLDTLIPSLLAIPKDMNN 959

Query: 330  AT---SLDLKHIHTLMKISNVIS-YFFNDKIM 413
             T    L LK + +L + +   +   F DK++
Sbjct: 960  PTVVRLLALKCLGSLPEFTPTTNLQLFRDKVI 991


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   TKSTIQTFNETFNVIQENEEKLNV 74
           T S ++TF +T +V+ E    +NV
Sbjct: 779 TSSVVETFEKTTDVVDEKTTSINV 802


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 12  TIQTFNETFNVIQENEEKLNVAIE-KLSTQLRNLS 113
           TIQ  N   N +   +EKL ++IE  L+ Q+  +S
Sbjct: 12  TIQKQNRRHNTVDNKQEKLPLSIEIFLNKQINKIS 46


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 78  IEKLSTQLRNLSRTSSNILISSQFNIVFSNLETALLCLSFQ 200
           ++KL + L+  SR +  ILI SQF  V   LE  L  L  +
Sbjct: 767 VKKLCSLLKK-SRPNERILIFSQFTQVLDILEYVLNTLDLE 806


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 291 VENHRHLPSDLELATSLDLKHIHTLMK 371
           +  HRHLP++++ A  +  + I++L +
Sbjct: 381 IARHRHLPTNVKKAAEIKREEINSLKR 407


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 318 DLELATSLDLKHIHTLMKISNVISYFF 398
           +LE  +SLD+K +   M +  +  YFF
Sbjct: 536 ELENVSSLDVKKLDMYMHLCELFCYFF 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,728
Number of Sequences: 5004
Number of extensions: 43630
Number of successful extensions: 152
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)