Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326B08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 31 0.56
05_02_0162 + 7219596-7219645,7220018-7220498 31 0.74
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 30 1.3
03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574 29 3.0
07_03_0732 + 21050941-21051811,21053676-21053720,21053931-210539... 28 4.0
01_06_0272 - 28065896-28065991,28066069-28066227,28066918-280669... 28 5.2
07_03_0752 - 21241883-21242233,21242336-21242486,21242586-212428... 27 6.9
02_05_0486 - 29423756-29423965,29425424-29425528 27 9.1
02_01_0755 + 5604554-5604608,5604706-5604734,5606558-5606641,560... 27 9.1
>10_08_0558 + 18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 31.1 bits (67), Expect = 0.56
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 6 KSTIQTFNETFNVIQENEEKLNVAIEKLSTQLRNLSRTSSNI-LISSQFNIVFSNLETAL 182
K +QT+ E N ++ ++ + IEKL +++R+L N+ ++ S + NL + +
Sbjct: 825 KDQVQTYLEEINTLKSSKNEKEEMIEKLQSEIRSLKFEYDNLKILMSTNDSEKHNLASQV 884
Query: 183 LCLSFQLE 206
L L LE
Sbjct: 885 LKLRRALE 892
>05_02_0162 + 7219596-7219645,7220018-7220498
Length = 176
Score = 30.7 bits (66), Expect = 0.74
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 165 NLETALLCLSFQLEDITNSILFSKLNI-IHPSILTPSQLHQELVENHRHLPSDLELATSL 341
NLE ++C+ Q+ D + FS HPS+ + + E+ N R E+AT+
Sbjct: 106 NLEKGIVCIDAQIIDFDGPLQFSPTKCRYHPSVRNRAAI-SEIATNER---DTNEIATNE 161
Query: 342 DLKHIHTL 365
+ H H++
Sbjct: 162 RVSHSHSI 169
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 156 VFSNLETALLCLSFQLEDITNSILFSKLNIIHPSILTPSQLHQEL 290
+F NL+ CLS L + +S+ ++ ++IHP + PS+L + L
Sbjct: 548 IFGNLDIESDCLSNHLSVLADSLNKAR-SLIHPPVKKPSKLGENL 591
>03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574
Length = 602
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 24 FNETFNVIQENEEKLNVAIEKLSTQLRNLSRTSSNILISSQ 146
F E I+E E+KLN AIE+ Q +S ++ I S+
Sbjct: 280 FQEEKLKIEEEEKKLNAAIEEAEKQYSEISSEMKDLEIKSK 320
>07_03_0732 +
21050941-21051811,21053676-21053720,21053931-21053942,
21054056-21054067,21054429-21054554,21054727-21054857,
21054939-21055149,21055237-21055474,21055557-21055707,
21055810-21055895,21055928-21055976
Length = 643
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 93 TQLRNLSRT--SSNILISSQFNIVFSNLETALLCLSFQLEDITNSIL 227
+QL+ + R +SN+L+ S FN S+ A L + Q +D+TN ++
Sbjct: 500 SQLKIIHRDLKASNVLLDSDFNPKISDFGLARLFGNDQSQDVTNRVV 546
>01_06_0272 -
28065896-28065991,28066069-28066227,28066918-28066966,
28067350-28067474,28067834-28068004,28068222-28068571,
28069322-28069478
Length = 368
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 45 IQENEEKLNVAIEKLSTQLRNLSRTSSNILISSQ 146
I+E E+KLN AIE+ Q +S ++ I S+
Sbjct: 227 IEEEEKKLNAAIEEAEKQYSEISSEMKDLEIKSK 260
>07_03_0752 -
21241883-21242233,21242336-21242486,21242586-21242823,
21242917-21243127,21243214-21243344,21245046-21245931,
21246087-21246140,21246397-21246461,21246842-21246892,
21246960-21247029,21247493-21247597
Length = 770
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/74 (21%), Positives = 33/74 (44%)
Frame = +3
Query: 6 KSTIQTFNETFNVIQENEEKLNVAIEKLSTQLRNLSRTSSNILISSQFNIVFSNLETALL 185
KS++ + +I + E ++ + +SN+L+ S +N S+ A L
Sbjct: 528 KSSLLDWGRRLKIINGVARGMQYLHEDSQLKIVHRDLKASNVLLDSDYNPKISDFGLARL 587
Query: 186 CLSFQLEDITNSIL 227
Q +D+TN ++
Sbjct: 588 FGGDQTQDVTNRVV 601
>02_05_0486 - 29423756-29423965,29425424-29425528
Length = 104
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 393 FFNDKIMFVLQIPLVEPQEFNVYLCIPLPVP 485
+F ++FV+ +P+ + +LC+ LP+P
Sbjct: 63 WFTKFVLFVVAVPMADLFSIFAWLCLRLPLP 93
>02_01_0755 +
5604554-5604608,5604706-5604734,5606558-5606641,
5606728-5606781,5606958-5607035,5607753-5607806,
5608060-5608119,5608202-5608297,5608403-5608504,
5608614-5608673,5608819-5609109
Length = 320
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 464 EVYIEFLRFYQWNL*NEHDLIIKEITYNIRN 372
E + FL+ +WN+ H +++ + + I+N
Sbjct: 37 ETLLRFLKAREWNVSKAHKMLVDSLNWRIQN 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,056,675
Number of Sequences: 37544
Number of extensions: 222981
Number of successful extensions: 528
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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