Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326B08f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92832-4|CAB07373.1| 488|Caenorhabditis elegans Hypothetical pr... 31 0.38
Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger p... 30 1.2
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr... 28 3.5
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ... 28 3.5
AF036694-3|AAB88343.3| 344|Caenorhabditis elegans Hypothetical ... 28 3.5
Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z78200-5|CAB01584.2| 512|Caenorhabditis elegans Hypothetical pr... 28 4.7
U21321-8|AAG00045.1| 296|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF067609-1|ABB51195.1| 394|Caenorhabditis elegans Hypothetical ... 27 6.2
AF098996-4|AAC68705.1| 888|Caenorhabditis elegans Hypothetical ... 27 8.1
AF067618-2|AAC19195.1| 920|Caenorhabditis elegans Nuclear hormo... 27 8.1
>Z92832-4|CAB07373.1| 488|Caenorhabditis elegans Hypothetical
protein F31D4.5 protein.
Length = 488
Score = 31.5 bits (68), Expect = 0.38
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Frame = +3
Query: 21 TFNETFNVIQENEEKLNVAIEKLSTQLRNLSRTSSNILISS--------QFNIVFSNLET 176
+ N +Q N E LN+ EK+ QL+ + R +LI + Q N +ET
Sbjct: 291 SLNSKTEHLQANMESLNIEKEKIHEQLQEIVREREKVLIDNQNLSTDKCQLNNRLMEIET 350
Query: 177 ALLCLSFQLEDITN 218
+ C+ + E I N
Sbjct: 351 SRNCIMTEKEKIEN 364
>Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical
protein F58E6.1b protein.
Length = 764
Score = 29.9 bits (64), Expect = 1.2
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Frame = +3
Query: 54 NEEKLNVAIEKLSTQLRNLSRTSSNILISSQFNIVFSNLETALLCL-----SFQLEDITN 218
N LN + L+ +N+ + S N + S NIV SN+ + +F E+ N
Sbjct: 629 NRTALNRRRKNLANNPKNIFKYSKNNINLSYSNIVASNILRTFTFINSKSNNFCSENRIN 688
Query: 219 SILFSKL--NIIHPSILTPSQLHQELVENHRHLPSDLELATSLDLK 350
S+ F ++ + + L L+ EL+ NH+ DL + +DL+
Sbjct: 689 SVCFLEIRHHWYEHADLNARSLNSELLSNHKFSDVDL-IYPDIDLE 733
>Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical
protein F58E6.1a protein.
Length = 966
Score = 29.9 bits (64), Expect = 1.2
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Frame = +3
Query: 54 NEEKLNVAIEKLSTQLRNLSRTSSNILISSQFNIVFSNLETALLCL-----SFQLEDITN 218
N LN + L+ +N+ + S N + S NIV SN+ + +F E+ N
Sbjct: 629 NRTALNRRRKNLANNPKNIFKYSKNNINLSYSNIVASNILRTFTFINSKSNNFCSENRIN 688
Query: 219 SILFSKL--NIIHPSILTPSQLHQELVENHRHLPSDLELATSLDLK 350
S+ F ++ + + L L+ EL+ NH+ DL + +DL+
Sbjct: 689 SVCFLEIRHHWYEHADLNARSLNSELLSNHKFSDVDL-IYPDIDLE 733
>AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger
protein STAT-B protein.
Length = 810
Score = 29.9 bits (64), Expect = 1.2
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Frame = +3
Query: 54 NEEKLNVAIEKLSTQLRNLSRTSSNILISSQFNIVFSNLETALLCL-----SFQLEDITN 218
N LN + L+ +N+ + S N + S NIV SN+ + +F E+ N
Sbjct: 675 NRTALNRRRKNLANNPKNIFKYSKNNINLSYSNIVASNILRTFTFINSKSNNFCSENRIN 734
Query: 219 SILFSKL--NIIHPSILTPSQLHQELVENHRHLPSDLELATSLDLK 350
S+ F ++ + + L L+ EL+ NH+ DL + +DL+
Sbjct: 735 SVCFLEIRHHWYEHADLNARSLNSELLSNHKFSDVDL-IYPDIDLE 779
>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 166 LLNTILNWELINILLDVRDKFLN*VESFSIATLSFSSFS 50
LL I + + +LL VRD+FLN + + SF+ +S
Sbjct: 666 LLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLASFAQYS 704
>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 166 LLNTILNWELINILLDVRDKFLN*VESFSIATLSFSSFS 50
LL I + + +LL VRD+FLN + + SF+ +S
Sbjct: 666 LLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLASFAQYS 704
>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 166 LLNTILNWELINILLDVRDKFLN*VESFSIATLSFSSFS 50
LL I + + +LL VRD+FLN + + SF+ +S
Sbjct: 666 LLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLASFAQYS 704
>AF036694-3|AAB88343.3| 344|Caenorhabditis elegans Hypothetical
protein CD4.5 protein.
Length = 344
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 3 TKSTIQTF-NETFNVIQENEEKLNVAIEKLSTQLRNLSRTSSNILISSQFNIVFSNLETA 179
T TIQ F E N +++N+ + ++K+++ T+S+IL SSQ N+ + +A
Sbjct: 124 TDPTIQKFFEEDGNGLEDNDASSAITVQKITS-------TASSILESSQVNVKELSSCSA 176
Query: 180 LLC 188
L C
Sbjct: 177 LTC 179
>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical protein
C45G3.1 protein.
Length = 1186
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Frame = +3
Query: 3 TKSTIQTFNETFNVIQENEEKLNVAIEKLSTQLRNLSRTSSNILISSQFNIVFSNLETAL 182
T + + VI + + +EKL +L + ++ +++LI + ++++ L
Sbjct: 1027 TNDNLHVVHVAATVIDRVTDLVPSLLEKLVVELNGI-KSITDVLIVADRGFSYTSILHPL 1085
Query: 183 LCLSFQL-----EDITNSILFSKLNIIHPSILTPSQLHQELVE 296
L + +L E++TNS + L I+ P ++ H E+ E
Sbjct: 1086 LNVLEKLFTKIPEEVTNSHILPHLKILSPRLMLLMLKHSEVKE 1128
>Z78200-5|CAB01584.2| 512|Caenorhabditis elegans Hypothetical
protein T04H1.7 protein.
Length = 512
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 51 ENEEKLNVAIEKLSTQLRNLSRTSSNILISSQFNIVFSNL 170
E+ +KL+ + KLS+ L+N +TS N+ + + + NL
Sbjct: 431 ESNKKLDDNLLKLSSNLKNAKQTSENLFLDTVESTYTDNL 470
>U21321-8|AAG00045.1| 296|Caenorhabditis elegans Hypothetical
protein ZK177.2 protein.
Length = 296
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 292 TSSWCN*DGVRIDGCIMFNLLKRMEFVISSNWKDKHK-RAVSRLLNTILNWE 140
+ SWC D R D + + KR+ ++ + +DK K R +++ NW+
Sbjct: 228 SKSWCGADPERHDISRLHTVAKRVGHSLNGSKRDKKKVRQAVKMVGAAKNWK 279
>AF067609-1|ABB51195.1| 394|Caenorhabditis elegans Hypothetical
protein C23H5.11 protein.
Length = 394
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 361 VCMCFKSRLVANSKSLGKCR*FSTSSW 281
+C+CF RL+ + +CR +S+ SW
Sbjct: 109 LCLCFTIRLLLLLNCIRRCRRWSSVSW 135
>AF098996-4|AAC68705.1| 888|Caenorhabditis elegans Hypothetical
protein T11F1.8 protein.
Length = 888
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 57 EEKLNVAIEKLSTQLRNLSRTSSNILISSQFNIVFSNLETALLCLSFQLEDITNSILFSK 236
EEKL VA + +S + L+ +S++ S F + L+CL + N+ S
Sbjct: 509 EEKLKVAFKDMSELVGGLTIDNSSLESLSFFKLNKITKAFHLVCLDNHGVSLVNNSKLSN 568
Query: 237 LNII 248
+NI+
Sbjct: 569 INIL 572
>AF067618-2|AAC19195.1| 920|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 266 protein.
Length = 920
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/73 (24%), Positives = 39/73 (53%)
Frame = +3
Query: 6 KSTIQTFNETFNVIQENEEKLNVAIEKLSTQLRNLSRTSSNILISSQFNIVFSNLETALL 185
K +++ F N ++ ++ ++V EK +Q+ ++ + SNI S QF+ F + +L
Sbjct: 616 KKSLEKFRS--NKMKLDDFMISVRTEKNLSQIGSIYKEVSNIPFSMQFD--FRKMRESLR 671
Query: 186 CLSFQLEDITNSI 224
L ++D+ S+
Sbjct: 672 YLEVPMKDMETSL 684
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,232,840
Number of Sequences: 27780
Number of extensions: 226347
Number of successful extensions: 708
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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