Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326B08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    29   0.022
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.47 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 29.5 bits (63), Expect = 0.022
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 51  ENEEKLNVAIEKLSTQLRNLSR--TSSNILISSQFNIVFSNLETAL 182
           EN   L+V +    T++R L++  T  N+LI+ +  I+F+  E  L
Sbjct: 274 ENRSNLHVIVNATVTKVRTLNKRATGVNVLINGRRRIIFARREVIL 319


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 30  ETFNVIQENEEKLNVAIE-KLSTQLRNLSRTSSNILISSQFNIVFSNLETALLCLSFQLE 206
           E+F+V+ +NEE L + +  K+   L    R   N    +++ +  SN    ++   F   
Sbjct: 342 ESFDVVAQNEETLQMIVSMKIMENLPQSGRI--NDPEGNEYMLALSNRMQKIINNDFNFN 399

Query: 207 DITNSIL 227
           D+   IL
Sbjct: 400 DVNFRIL 406


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 207 DITNSILFSKLNIIHPSILTPSQLHQELVENHRHL 311
           D+ ++ L S  N+++    TP   H  +   H H+
Sbjct: 392 DLEDNALASHNNLLNNVYSTPGPHHHTMGHGHSHI 426


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 51  ENEEKLNVAIEKLSTQLRNLSRTSSNILISSQFNIVFSNLE 173
           EN+EK NV ++    + R  S     IL + + +   SNL+
Sbjct: 109 ENKEKSNVCLKFEEQKRRKKSLDDVKILRNDRIDSYKSNLK 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,406
Number of Sequences: 438
Number of extensions: 3462
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)