Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326B07f
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   2.9  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   9.0  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   9.0  
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    25   9.0  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 18   IVNNTTAPINISFSQKYQAIISKTYLIYTLKRQLLETFVVLLLCSYETRVS 170
            +V+N     N+    +Y+A+  K  L      Q L   V  LLCS+E  VS
Sbjct: 2344 LVSNVPEIENLDAGSRYRAV--KKILDLLKVNQGLSNLVTKLLCSFENYVS 2392


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 23  KQYYSTNKYLIFTKISSYN 79
           K++YSTN++  F++ + +N
Sbjct: 513 KRFYSTNRHKAFSRFADFN 531


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 23  KQYYSTNKYLIFTKISSYN 79
           K++YSTN++  F++ + +N
Sbjct: 513 KRFYSTNRHKAFSRFADFN 531


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 373 DRKKMLCSKVSGTKTAMETKL 435
           D K M  SKV+ T+TA  TK+
Sbjct: 51  DHKVMEASKVADTRTAWSTKI 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,032,357
Number of Sequences: 5004
Number of extensions: 37782
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)