Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326B07f
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF537097-1|AAN60468.1|  110|Caenorhabditis elegans PHF-5 protein.      28   4.6  
AF537096-1|AAN60467.1|  110|Caenorhabditis elegans PHF-5 protein.      28   4.6  
AC026301-14|AAP13738.1|  110|Caenorhabditis elegans Phd finger f...    28   4.6  
Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U13875-14|AAA21155.1|  196|Caenorhabditis elegans Hypothetical p...    27   6.1  
AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and c...    27   6.1  

>AF537097-1|AAN60468.1|  110|Caenorhabditis elegans PHF-5 protein.
          Length = 110

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 240 NYGSYKVRCAICRTIGKETSNAC 172
           NYGSY+ RC IC   G   +  C
Sbjct: 50  NYGSYQGRCVICGGAGVSDAYYC 72


>AF537096-1|AAN60467.1|  110|Caenorhabditis elegans PHF-5 protein.
          Length = 110

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 240 NYGSYKVRCAICRTIGKETSNAC 172
           NYGSY+ RC IC   G   +  C
Sbjct: 50  NYGSYQGRCVICGGAGVSDAYYC 72


>AC026301-14|AAP13738.1|  110|Caenorhabditis elegans Phd finger
           family protein 5 protein.
          Length = 110

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 240 NYGSYKVRCAICRTIGKETSNAC 172
           NYGSY+ RC IC   G   +  C
Sbjct: 50  NYGSYQGRCVICGGAGVSDAYYC 72


>Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 291 YTIVYFYNIVLSRLTHVNYGSYKVRCAICRTIGKETSNACYSP 163
           + + +FYN++L+   H  Y S+              S ACY P
Sbjct: 131 FYVDFFYNVILAWGLHYLYTSFSFNLPWASCNNSYNSPACYEP 173


>Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 291 YTIVYFYNIVLSRLTHVNYGSYKVRCAICRTIGKETSNACYSP 163
           + + +FYN++L+   H  Y S+              S ACY P
Sbjct: 131 FYVDFFYNVILAWGLHYLYTSFSFNLPWASCNNSYNSPACYEP 173


>U13875-14|AAA21155.1|  196|Caenorhabditis elegans Hypothetical
           protein C26E6.1 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 331 THA*SHPLGLPVNKDRKKMLCSKVSGTKTAMET 429
           +H   H   + +N  RK+ +C KV GT+  ++T
Sbjct: 113 SHNDFHKRNILINDTRKETICYKVEGTEYVLKT 145


>AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and
           chloride-dependentantidepressant- and cocaine-sensitive
           dopamine transporterprotein.
          Length = 615

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 291 YTIVYFYNIVLSRLTHVNYGSYKVRCAICRTIGKETSNACYSP 163
           + + +FYN++L+   H  Y S+              S ACY P
Sbjct: 131 FYVDFFYNVILAWGLHYLYTSFSFNLPWASCNNSYNSPACYEP 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,406,873
Number of Sequences: 27780
Number of extensions: 216177
Number of successful extensions: 592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)