Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326B06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...   142   3e-35
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    29   0.42 
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   1.3  
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    27   2.2  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   6.8  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   9.0  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   9.0  

>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score =  142 bits (344), Expect = 3e-35
 Identities = 74/151 (49%), Positives = 95/151 (62%), Gaps = 3/151 (1%)
 Frame = -3

Query: 519 QLLQVFESSADHLSREQFTEFSVPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAGHSLDI 340
           QLLQ+F+S A  LS E FTE++ PYL  I   V+  L +K  ++VPM +FAKGA +++D 
Sbjct: 201 QLLQIFDSWAGELSPEDFTEYAYPYLVRICQEVKQHLKKKKRDEVPMIVFAKGAWYAIDQ 260

Query: 339 QAQLGYETIGLDWTVDPTEARKIVG-ENITLQGNLDPQDLYKTPEEIKTLTTEMVKKF-- 169
               GY+ IGLDWTV P EA +I G   +T QGNLDP  LY T E I+  T EM++ F  
Sbjct: 261 LCDSGYDVIGLDWTVSPKEAVRIRGNRRVTFQGNLDPNILYGTREIIEARTKEMIQDFGG 320

Query: 168 GKHRYIANLGHGITPQTPLESMTVFTETVHE 76
           GK  YI NLGHGITP    + +  F E  H+
Sbjct: 321 GKQGYIINLGHGITPGVNPDDVRFFLEKCHQ 351


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = -3

Query: 519  QLLQVFESSADHLSREQFTEFSVPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAGHSLDI 340
            + LQ+FES  D+  +  F ++ +P    +    R +  E+     P+ IFA  A     +
Sbjct: 2244 ETLQIFESHPDNYYQVCFVDYHMPVYDGLEVTRRMRKIERKHGCAPLPIFALTADMQPTM 2303

Query: 339  QAQLGYETIGL 307
            + Q  ++ +G+
Sbjct: 2304 ETQ--FQEVGI 2312


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 52  IKIFFLYSFMYCFSENSHTLK--WGLWCNPMSQISYVS 159
           +  F +++  Y   + + TL   W LW NP+ Q+S +S
Sbjct: 332 VLFFTIFTNAYKLRQTNFTLDFLWVLWRNPLPQLSIIS 369


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +1

Query: 118 GLWCNPMSQISYVSMFSKLFHHFSCKCFYFFRSFV 222
           G W NP + I  V  F+   H    KC      FV
Sbjct: 217 GSWINPGTHIDLVGGFTPHMHEADSKCIQISNVFV 251


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 267 GENITLQGNLDPQDLYKTPEEIKTLT---TEMVKKF 169
           GEN+ ++ +   +++ K PE I T +   T ++KKF
Sbjct: 156 GENLQIKSSSSLEEINKIPENIVTQSLSYTNLLKKF 191


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 244 SLQSNVFTYNFPGFSRIHCP 303
           SL  NV +YN+ GF++ H P
Sbjct: 187 SLALNVSSYNYLGFAQSHGP 206


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 351 SLDIQAQLGYETIGLDWTVDPTEARK 274
           SL +    GY+ IGL+W++     RK
Sbjct: 540 SLGVALAKGYDEIGLEWSLTKPFLRK 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,521
Number of Sequences: 5004
Number of extensions: 43253
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)