Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326B06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964... 107 5e-24
01_05_0741 - 24821208-24821220,24821476-24821711,24822276-248225... 69 3e-12
03_02_0945 - 12614658-12614909,12615200-12615325,12616684-126168... 48 6e-06
07_03_0556 + 19438394-19438537,19438638-19438747,19442018-194422... 30 1.3
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 29 2.3
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 28 4.0
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637... 28 5.2
01_06_1109 - 34576866-34577043,34577774-34577845,34577934-345780... 28 5.2
01_01_0348 + 2769295-2769660,2770082-2770192,2770284-2770358,277... 27 6.9
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879... 27 9.1
>03_02_0932 + 12495700-12495738,12495859-12496093,12496178-12496423,
12496519-12496572,12497329-12497589,12497750-12497802,
12497893-12498016,12498147-12498401,12498798-12499888,
12500001-12500007,12500316-12500445,12500617-12500731,
12500783-12500853,12501246-12501354,12501550-12501738,
12502519-12502644,12503048-12503563
Length = 1206
Score = 107 bits (257), Expect = 5e-24
Identities = 57/144 (39%), Positives = 84/144 (58%)
Frame = -3
Query: 519 QLLQVFESSADHLSREQFTEFSVPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAGHSLDI 340
Q +Q+F+S A LS F EFS+PYLK I V+ ++ ++P+ ++A G+G L+
Sbjct: 1061 QAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVK-----ETHPELPLILYASGSGGLLER 1115
Query: 339 QAQLGYETIGLDWTVDPTEARKIVGENITLQGNLDPQDLYKTPEEIKTLTTEMVKKFGKH 160
G + + LDWTVD E RK +G NI +QGN+DP L+ + E I + V+K G
Sbjct: 1116 LPLTGVDVVSLDWTVDMAEGRKRLGSNIAVQGNVDPGVLFGSKEFISKRIFDTVQKAGNS 1175
Query: 159 RYIANLGHGITPQTPLESMTVFTE 88
++ NLGHGI TP E++ F E
Sbjct: 1176 GHVLNLGHGIKVGTPEENVAHFFE 1199
>01_05_0741 -
24821208-24821220,24821476-24821711,24822276-24822560,
24822790-24822850,24823399-24823463,24823571-24823959,
24824059-24824188
Length = 392
Score = 68.5 bits (160), Expect = 3e-12
Identities = 33/100 (33%), Positives = 56/100 (56%)
Frame = -3
Query: 519 QLLQVFESSADHLSREQFTEFSVPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAGHSLDI 340
Q +Q+F+S L + ++S PY+K I + ++ + VP+ ++ G G L+
Sbjct: 283 QCIQIFDSWGGQLPPHVWEQWSKPYIKQIVNKIKIECPN-----VPLVLYINGNGGLLER 337
Query: 339 QAQLGYETIGLDWTVDPTEARKIVGENITLQGNLDPQDLY 220
G + IGLDWTVD + R+ +G I++QGN+DP L+
Sbjct: 338 MTDTGVDVIGLDWTVDMADGRRRLGNKISVQGNVDPAFLF 377
>03_02_0945 -
12614658-12614909,12615200-12615325,12616684-12616872,
12617059-12617169,12617629-12617744,12617861-12617966
Length = 299
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = -3
Query: 390 QVPMTIFAKGAGHSLDIQAQLGYETIGLDWTVDPTEARKIVGENITLQGNLDPQDLYKTP 211
++P+ ++A G+G L+ G + + L TVD E RK +G NI +QGN+DP L+ +
Sbjct: 227 ELPLILYASGSGGLLERLPLTGVDVVSLG-TVDMAEGRKRLGSNIAVQGNVDPGVLFGSK 285
Query: 210 EEI 202
E I
Sbjct: 286 EFI 288
>07_03_0556 +
19438394-19438537,19438638-19438747,19442018-19442288,
19442398-19442504,19442625-19443017,19443326-19443700,
19443799-19443877,19444745-19444957
Length = 563
Score = 29.9 bits (64), Expect = 1.3
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Frame = -3
Query: 423 VRAKLTEKSLEQVPMTIFAKGAGHSLDIQAQLGYETIGLDWTVDPTEARKIVGENITLQG 244
V + T K + + ++ G S A G TI +DW+++ +AR I N+T G
Sbjct: 295 VSTRFTSKIISTTAVLRYSGSGGKSP--AALPGGPTIQIDWSLN--QARSIRW-NLTASG 349
Query: 243 -NLDPQDLYKTPEEIKTLTTEMVKKF----GKHRYIANLGHGITPQTPLE 109
+PQ Y T T + GK RY N + P TPL+
Sbjct: 350 PRPNPQGSYHYGMVTTTRTIRLASSSATVNGKQRYSVNGVSHVNPDTPLK 399
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 49 CIKIFFLYSFMYCFSENSHTLKWGLWCNPMS 141
C FF +F C +ENS ++W NP+S
Sbjct: 130 CASYFFHKNFKECANENSKCIRWQKSGNPIS 160
>11_01_0574 +
4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/103 (22%), Positives = 44/103 (42%)
Frame = -3
Query: 471 QFTEFSVPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAGHSLDIQAQLGYETIGLDWTVD 292
Q+ E LK++ + +K TEK+ ++V I +G + G TI +W +
Sbjct: 608 QYEEKDRLLLKNLCFILGSKFTEKATKKVTHLICKFASGPKYEAYYSRGIPTITAEWLFE 667
Query: 291 PTEARKIVGENITLQGNLDPQDLYKTPEEIKTLTTEMVKKFGK 163
K++ ++ L GN + + P + + +FGK
Sbjct: 668 CVRQNKLI--SVRLAGN---ASVNEEPNDPGVSKRRRLSEFGK 705
>04_04_0687 -
27262742-27262784,27263429-27263584,27263698-27263783,
27263881-27264188,27265337-27265455,27265989-27266075,
27266440-27266546
Length = 301
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 55 KIFFLYSFMYCFSENSHTLKWGLWCNPMSQISYVSMFSKLFHHF 186
++FF C +NS LW NP + + F+KL F
Sbjct: 6 RLFFAVPLCRCNDKNSLAPSCELWLNPETSARAANSFAKLLARF 49
>01_06_1109 -
34576866-34577043,34577774-34577845,34577934-34578079,
34578337-34578406,34578516-34578573,34578658-34578751,
34579264-34579347,34579958-34580341
Length = 361
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 372 FAKGAGHSLDIQAQLGYETIGLDWTVDPTEARKIVGENITLQGNLDPQDLY 220
F G +L + L E+IG+ W V P R I L +DPQ++Y
Sbjct: 256 FTLGIAPALAKEHLLNAESIGIRWDVSPDGLRFY----INLFNEIDPQNMY 302
>01_01_0348 +
2769295-2769660,2770082-2770192,2770284-2770358,
2770566-2770626,2770853-2770926,2771004-2771108,
2771475-2771582,2771681-2771784,2771939-2772088,
2772163-2772286,2772746-2772925
Length = 485
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/71 (26%), Positives = 26/71 (36%)
Frame = -3
Query: 285 EARKIVGENITLQGNLDPQDLYKTPEEIKTLTTEMVKKFGKHRYIANLGHGITPQTPLES 106
E K G G+ D EE TTE V G++ + +LGH Q
Sbjct: 392 EESKRKGNKALAAGDSDLSASTSEDEESDDETTEEVNSVGQYGCVVDLGHNFDDQLGRLI 451
Query: 105 MTVFTETVHEA 73
T+T H +
Sbjct: 452 FRCRTDTKHSS 462
>03_05_0223 -
22087076-22087340,22087448-22087726,22087808-22087950,
22088029-22088133,22088272-22088465,22088561-22088753,
22088893-22089202,22089335-22089558,22089862-22089990,
22090019-22090078,22090426-22090617,22091463-22091522,
22091606-22091688,22092473-22092611,22092949-22093083,
22093187-22093462
Length = 928
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = -3
Query: 291 PTEARKIVGENITLQGNLDPQDLYKTPEEIKTLTTEMVKKFGKHRYIANLG 139
P K+V E + Q P D KTPEEI E ++K K R LG
Sbjct: 318 PDAYDKLVKEMVMDQ-RARPSDRTKTPEEIAQEEKERLEKLEKERQKRMLG 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,668,801
Number of Sequences: 37544
Number of extensions: 232597
Number of successful extensions: 524
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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