Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326B06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   5.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   7.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 22  NSLIPNHITCIKIFFLYSFMYCFSE 96
           +S I  ++ CI +  +Y  +YC+++
Sbjct: 196 SSSISFYVPCIVMLGIYCRLYCYAQ 220


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 275 FLASVGSTVQSSPIVS*PN 331
           F A+V + VQSS IVS P+
Sbjct: 377 FNAAVAAAVQSSSIVSSPD 395


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -1

Query: 326 VMKLLD*IGQWILLKPGKL*VKTLLCKEILILRIY 222
           VM ++   G   LL PG   +    CK +  L  Y
Sbjct: 292 VMSMIGAFGNKALLTPGVTMIPACTCKAVACLDPY 326


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 104 ILSSGVCGVIPCPKLAMYLC 163
           I  S  CG++ C K    LC
Sbjct: 50  IAMSSACGIVQCAKGPDELC 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,282
Number of Sequences: 438
Number of extensions: 2694
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)