Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326B04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038618-4|AAB92069.1|  181|Caenorhabditis elegans Hypothetical ...    56   2e-08
AF038618-5|AAO91720.1|   60|Caenorhabditis elegans Hypothetical ...    50   8e-07
U50191-7|AAK31555.2|  454|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical pr...    29   2.0  
L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF003144-1|AAB54196.2|  235|Caenorhabditis elegans Hypothetical ...    27   6.2  

>AF038618-4|AAB92069.1|  181|Caenorhabditis elegans Hypothetical
           protein F42G8.10a protein.
          Length = 181

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 38/98 (38%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
 Frame = -3

Query: 501 KNWVSYGFDYTSKEED-TNAHHATFFFSVTLCIVFGGVCWAY--SPDVHM-RDWAQREAF 334
           + W+ +      + +D    H A F     L   F   CW     PD  M R+WA REA 
Sbjct: 83  REWIWFSQIAHDEHKDWARFHQAAFLLFTVLTTWF--TCWIMFARPDWPMGREWALREAH 140

Query: 333 LELRRREKAGLPPISPNFI--DPKLIKLPDESELCDVE 226
           LE+ RREKAGLP ISP+ I  D     LP + EL D +
Sbjct: 141 LEIARREKAGLPLISPDLIPRDRVAATLPSDEELRDFD 178


>AF038618-5|AAO91720.1|   60|Caenorhabditis elegans Hypothetical
           protein F42G8.10b protein.
          Length = 60

 Score = 50.4 bits (115), Expect = 8e-07
 Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
 Frame = -3

Query: 375 PDVHM-RDWAQREAFLELRRREKAGLPPISPNFI--DPKLIKLPDESELCDVE 226
           PD  M R+WA REA LE+ RREKAGLP ISP+ I  D     LP + EL D +
Sbjct: 5   PDWPMGREWALREAHLEIARREKAGLPLISPDLIPRDRVAATLPSDEELRDFD 57


>U50191-7|AAK31555.2|  454|Caenorhabditis elegans Hypothetical
           protein T14B4.9 protein.
          Length = 454

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 435 TFFFSVTLCIVFGGVCWAYSPDVHMRDWAQREAFLELRRREKAGL 301
           TFFF +   +V   V ++ +P + M  W  +E  +  RR+E A L
Sbjct: 8   TFFFLLLTMLVCTIVIFSMAPRITMSFWTSKETNILWRRKETAHL 52


>Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical
           protein C54D10.4 protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 387 WAYSPDVHMRD---WAQREAFLELRRREKAGLPPISP 286
           W +S ++H+ D   WA R+   E ++ E+    P+SP
Sbjct: 360 WRHSLEIHVNDHRMWAMRKTAKETKKIEEKNPSPVSP 396


>L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical
           protein C02C2.4 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -3

Query: 465 KEEDTNAHHATFFFSVTLCIVFGGVCWAYSPDVHMRDWAQREAFLELRRREK 310
           +++ T A     F   +L  +F G  +       ++DWA+ E   E+  +EK
Sbjct: 485 RKDGTAAEWQNIFIGCSLAHIFSGSIFLLFGSGELQDWAKVEDDQEMNEKEK 536


>AF003144-1|AAB54196.2|  235|Caenorhabditis elegans Hypothetical
           protein C55C2.4 protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 477 DYTSKEEDTNAHHATFFFSVTLCIVFG 397
           DY  +EED       F+  + LC+VFG
Sbjct: 175 DYDDEEEDQGNGGYGFYAEIYLCVVFG 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,085,806
Number of Sequences: 27780
Number of extensions: 259745
Number of successful extensions: 648
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)