Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326B03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    27   1.3  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    27   2.2  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   3.9  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   5.2  
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    25   6.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   9.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.0  

>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 250 TENKILQIHNMKFECGNIKFIIISY 324
           T  +I Q+ N  F C N+K+II+ Y
Sbjct: 210 TTPRIAQLTNECFTCENLKYIILDY 234


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 106 YERYYFLCIYFL-LYTLYALNVYFNKEYL 23
           Y  +Y+LC +FL LY   + N + N+E L
Sbjct: 160 YSFFYYLCFWFLGLYIYRSSNYWSNEEKL 188


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 201 FVKNSVNVVSALFLFNQHKSKISKKSDENTSCMSVIISYA 82
           F+   + V   L L + HKS  SKK +     M   + YA
Sbjct: 826 FLNEDIIVKIVLILIDLHKSTYSKKLNSYVVPMETFVKYA 865


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 246 TITYFVIVKALKCLRFVKNSVNVVSALFLFNQHKSKISKKSDEN 115
           +I + V+ + LKC+ + ++ +N    +FL N  K K+  +   N
Sbjct: 63  SIVFVVVFQDLKCMAYSQSLLNSAHNIFL-NLFKEKLEDRQVPN 105


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 366 QTVNGFWVGCDNYHNIT 416
           +T NG    CDNY N+T
Sbjct: 23  ETFNGHLENCDNYMNLT 39


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 126 SDENTSCMSVIISYAFIFCYILYTL 52
           S +NTS + V+I+  F+F  +L+ L
Sbjct: 4   SSQNTSFVWVVIATGFLFHLVLFVL 28


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 91  NNNAHTTSIFIRFFAYFTFM 150
           N    T S +I+F+AYFTF+
Sbjct: 225 NEGLITLSGYIKFWAYFTFI 244


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 182 FTEFLTNLKHFNALTMTK 235
           F+ FLTN+K F A+T  K
Sbjct: 527 FSGFLTNIKPFEAVTFQK 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,104
Number of Sequences: 5004
Number of extensions: 27557
Number of successful extensions: 49
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)