Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326B03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z81581-16|CAI46620.1|  656|Caenorhabditis elegans Hypothetical p...    29   1.5  
Z81581-15|CAI46619.1|  729|Caenorhabditis elegans Hypothetical p...    29   1.5  
Z81143-11|CAI46592.1|  656|Caenorhabditis elegans Hypothetical p...    29   1.5  
Z81143-10|CAB03514.2|  729|Caenorhabditis elegans Hypothetical p...    29   1.5  
DQ372920-1|ABD16184.1|  729|Caenorhabditis elegans Krev interact...    29   1.5  
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical
           protein F54D7.3 protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -3

Query: 258 IFCVTITYFVIV-KALKCLRFVKNSVNVVSALFLFNQHKSKISKKSDENTSCMSVIISYA 82
           +F   + Y +I+ +  +  + V    +  S+  L  ++     +K+   T  M+ +I  A
Sbjct: 202 LFVTVVCYSLILWRISRKSKLVGEKESEKSSELLLRRNGQNNLEKAKSRTLKMTFVIVLA 261

Query: 81  FIFCYILYTL*MF 43
           FIFC+  Y++ MF
Sbjct: 262 FIFCWTPYSILMF 274


>Z81581-16|CAI46620.1|  656|Caenorhabditis elegans Hypothetical
           protein ZK265.1b protein.
          Length = 656

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -3

Query: 399 CHNQPRIH*LFVKSXXXXXXXXXXXITNYDKFYVSAFKLHIMNL*NFIFCVTITYFVIVK 220
           CHNQP +  +  K+              +D +++S F +   +      CV    F+ ++
Sbjct: 155 CHNQPEMFDIHTKNMILILERWLIDSQTFDSYFLSHFFMKESSRTRIKTCVHNPAFIDLQ 214

Query: 219 ALKCLRFVKNSV--NVVSA 169
             +C+R + +SV  NV SA
Sbjct: 215 E-QCIRHMSHSVRSNVSSA 232


>Z81581-15|CAI46619.1|  729|Caenorhabditis elegans Hypothetical
           protein ZK265.1a protein.
          Length = 729

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -3

Query: 399 CHNQPRIH*LFVKSXXXXXXXXXXXITNYDKFYVSAFKLHIMNL*NFIFCVTITYFVIVK 220
           CHNQP +  +  K+              +D +++S F +   +      CV    F+ ++
Sbjct: 155 CHNQPEMFDIHTKNMILILERWLIDSQTFDSYFLSHFFMKESSRTRIKTCVHNPAFIDLQ 214

Query: 219 ALKCLRFVKNSV--NVVSA 169
             +C+R + +SV  NV SA
Sbjct: 215 E-QCIRHMSHSVRSNVSSA 232


>Z81143-11|CAI46592.1|  656|Caenorhabditis elegans Hypothetical
           protein ZK265.1b protein.
          Length = 656

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -3

Query: 399 CHNQPRIH*LFVKSXXXXXXXXXXXITNYDKFYVSAFKLHIMNL*NFIFCVTITYFVIVK 220
           CHNQP +  +  K+              +D +++S F +   +      CV    F+ ++
Sbjct: 155 CHNQPEMFDIHTKNMILILERWLIDSQTFDSYFLSHFFMKESSRTRIKTCVHNPAFIDLQ 214

Query: 219 ALKCLRFVKNSV--NVVSA 169
             +C+R + +SV  NV SA
Sbjct: 215 E-QCIRHMSHSVRSNVSSA 232


>Z81143-10|CAB03514.2|  729|Caenorhabditis elegans Hypothetical
           protein ZK265.1a protein.
          Length = 729

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -3

Query: 399 CHNQPRIH*LFVKSXXXXXXXXXXXITNYDKFYVSAFKLHIMNL*NFIFCVTITYFVIVK 220
           CHNQP +  +  K+              +D +++S F +   +      CV    F+ ++
Sbjct: 155 CHNQPEMFDIHTKNMILILERWLIDSQTFDSYFLSHFFMKESSRTRIKTCVHNPAFIDLQ 214

Query: 219 ALKCLRFVKNSV--NVVSA 169
             +C+R + +SV  NV SA
Sbjct: 215 E-QCIRHMSHSVRSNVSSA 232


>DQ372920-1|ABD16184.1|  729|Caenorhabditis elegans Krev interaction
           trapped/cerebralcavernous malformation 1 isoform a
           protein.
          Length = 729

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -3

Query: 399 CHNQPRIH*LFVKSXXXXXXXXXXXITNYDKFYVSAFKLHIMNL*NFIFCVTITYFVIVK 220
           CHNQP +  +  K+              +D +++S F +   +      CV    F+ ++
Sbjct: 155 CHNQPEMFDIHTKNMILILERWLIDSQTFDSYFLSHFFMKESSRTRIKTCVHNPAFIDLQ 214

Query: 219 ALKCLRFVKNSV--NVVSA 169
             +C+R + +SV  NV SA
Sbjct: 215 E-QCIRHMSHSVRSNVSSA 232


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
 Frame = -3

Query: 195 KNSVNVVSALFLF---------NQHKSKISKKSDENTSCMSVIISYAFIFCYILYTL*MF 43
           +NSVNV+SA+F F         N +   I   S E TS   +  S AF+  YIL +  +F
Sbjct: 12  QNSVNVISAVFNFVFGIFGVICNFNIISIFLTSTERTSFNLICFSRAFVNFYILLSSFLF 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,222,130
Number of Sequences: 27780
Number of extensions: 152253
Number of successful extensions: 387
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)