Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A12f
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    32   0.049
SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.26 
SPCC188.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         29   0.26 
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    27   1.1  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   2.4  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    26   2.4  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    25   5.6  

>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 31.9 bits (69), Expect = 0.049
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -3

Query: 430 GRALTGDLGGTAKCSEFTNAIISKL 356
           G+ LT DLGG+A   +FT+AI+ ++
Sbjct: 329 GKTLTKDLGGSASTGDFTHAILERM 353


>SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 8/13 (61%), Positives = 13/13 (100%)
 Frame = -1

Query: 123 SNHHHSYLYHCQH 85
           +NH+H++LYHCQ+
Sbjct: 78  NNHNHAFLYHCQY 90


>SPCC188.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 88

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 254 RCVTVTPKYKRIIIEFKLLYSI 189
           RCV + P+YK+ +I    +YSI
Sbjct: 5   RCVLIKPEYKKFLIHVNFIYSI 26


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -3

Query: 424 ALTGDLGGTAKCSEFTNAIISKL 356
           A T DLGG +   ++T+AIISKL
Sbjct: 355 ARTKDLGGKSNNVQYTDAIISKL 377


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 108 NGDGLIIRYLFTDQTTFLQHKYYDCLCNTV 197
           N    I+R L TDQ   +QH+   C+CN V
Sbjct: 668 NDFNYIVRML-TDQDEGIQHRGLVCICNIV 696


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 292 SLNKYFFHEYSNTGTAPIQPNSV 360
           S NK  F+E+ N  T P + NSV
Sbjct: 216 STNKNLFYEFPNGTTEPFEKNSV 238


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 250 HLKHQNATFDVTFHSLNKYFFHEYSNTGTAP 342
           H KH N  F      LNKY FH+  +   AP
Sbjct: 52  HFKHSN--FASFVRQLNKYDFHKVRHEEGAP 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,598
Number of Sequences: 5004
Number of extensions: 33790
Number of successful extensions: 57
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)