Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A12f
         (462 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U07681-1|AAA85639.1|  366|Homo sapiens NAD(H)-specific isocitrat...    35   0.12 
BC021967-1|AAH21967.1|  366|Homo sapiens isocitrate dehydrogenas...    35   0.12 
AL442090-1|CAC09449.1|  288|Homo sapiens hypothetical protein pr...    35   0.12 
AK222973-1|BAD96693.1|  366|Homo sapiens isocitrate dehydrogenas...    35   0.12 
AL049712-2|CAC01443.1|  383|Homo sapiens isocitrate dehydrogenas...    31   1.5  
AF023265-1|AAD09339.1|  383|Homo sapiens NAD+-specific isocitrat...    31   1.5  

>U07681-1|AAA85639.1|  366|Homo sapiens NAD(H)-specific isocitrate
           dehydrogenase alpha subunit precursor protein.
          Length = 366

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -3

Query: 430 GRALTGDLGGTAKCSEFTNAIISKL 356
           G++LT DLGG AKCS+FT  I  ++
Sbjct: 338 GKSLTKDLGGNAKCSDFTEEICRRV 362


>BC021967-1|AAH21967.1|  366|Homo sapiens isocitrate dehydrogenase 3
           (NAD+) alpha protein.
          Length = 366

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -3

Query: 430 GRALTGDLGGTAKCSEFTNAIISKL 356
           G++LT DLGG AKCS+FT  I  ++
Sbjct: 338 GKSLTKDLGGNAKCSDFTEEICRRV 362


>AL442090-1|CAC09449.1|  288|Homo sapiens hypothetical protein
           protein.
          Length = 288

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -3

Query: 430 GRALTGDLGGTAKCSEFTNAIISKL 356
           G++LT DLGG AKCS+FT  I  ++
Sbjct: 260 GKSLTKDLGGNAKCSDFTEEICRRV 284


>AK222973-1|BAD96693.1|  366|Homo sapiens isocitrate dehydrogenase 3
           (NAD+) alpha precursor variant protein.
          Length = 366

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -3

Query: 430 GRALTGDLGGTAKCSEFTNAIISKL 356
           G++LT DLGG AKCS+FT  I  ++
Sbjct: 338 GKSLTKDLGGNAKCSDFTEEICRRV 362


>AL049712-2|CAC01443.1|  383|Homo sapiens isocitrate dehydrogenase 3
           (NAD+) beta protein.
          Length = 383

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 430 GRALTGDLGGTAKCSEFTNAIISKL 356
           G+  T D+GG A C +FT A+I+ L
Sbjct: 356 GKVRTSDMGGYATCHDFTEAVIAAL 380


>AF023265-1|AAD09339.1|  383|Homo sapiens NAD+-specific isocitrate
           dehydrogenase beta subunit isoform A protein.
          Length = 383

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 430 GRALTGDLGGTAKCSEFTNAIISKL 356
           G+  T D+GG A C +FT A+I+ L
Sbjct: 356 GKVRTSDMGGYATCHDFTEAVIAAL 380


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,423,777
Number of Sequences: 237096
Number of extensions: 1054159
Number of successful extensions: 1734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1722
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)