Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   3.9  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    25   5.2  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   5.2  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   9.0  

>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 199 TTLGIPEADDPWKKIVXASXPDSIWHSLINC 291
           T  G+P  DD W+  +    PDS+     +C
Sbjct: 255 TIPGLPMVDDYWQDQIMVKIPDSLGECTQDC 285


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 359 PPSNWQSYCDT 391
           PP+NW+SY DT
Sbjct: 149 PPNNWRSYFDT 159


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 131 RVWECHALSVKVARRSXSGTXHVPHL 208
           R W CH  ++K+ RRS     H  HL
Sbjct: 18  RRW-CHECTIKIFRRSFDIARHTVHL 42


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 418 MSELLNTHPVSVQEELTSYCVSLLTDXEARRC 513
           ++ELL  H V +Q   +     L T+ + RRC
Sbjct: 171 LTELLQVHNVMLQVNFSFQARQLNTEIQLRRC 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,731
Number of Sequences: 5004
Number of extensions: 32977
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)