Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0385 - 28506326-28506891,28506993-28507405,28507496-285077...    28   4.0  
05_06_0275 - 26869155-26870480                                         27   6.9  
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347...    27   6.9  
11_01_0548 + 4322875-4323213                                           27   9.1  

>02_05_0385 -
           28506326-28506891,28506993-28507405,28507496-28507743,
           28507820-28508480,28508572-28509498,28509588-28509847,
           28509943-28510143,28515547-28515633,28516200-28516375,
           28516465-28516519,28516623-28516910
          Length = 1293

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 337 CPL*SSSAXPPXDRQRSLLGNAIWNPVXKLXRFSSMGRPLQVFQVW 200
           C L  S A  P  R+R ++GN + N +  + RF + G  +   QVW
Sbjct: 181 CQLCRSEARTPEWRRRGVIGNLVGNFMHYISRFLA-GFAIGFSQVW 225


>05_06_0275 - 26869155-26870480
          Length = 441

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = +1

Query: 70  AAVSGQVSYKLEQALNLWGESSMGVSCPERQGCSAERIWYAACTTLGIP--EADDPWKKI 243
           AA S  VS K      LW   +      E    +AERI   AC    +P  ++DD W  +
Sbjct: 274 AAKSKWVSPKSTLDAALWESDTDEEEDDELSQSTAERIGSLACAASSLPDWDSDDGWIDV 333

Query: 244 VXASXPDS 267
           +     +S
Sbjct: 334 ISTPTEES 341


>01_06_1303 -
           36132588-36132710,36133879-36134103,36134318-36134713,
           36135352-36135547,36135591-36135740,36135818-36135924,
           36135987-36136094,36136354-36136435,36136436-36136536,
           36136778-36136996,36137455-36137583,36137665-36137742,
           36137816-36137929,36138071-36138230,36139224-36139441
          Length = 801

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 149 ALSVKVARRSXSGTXHVPHLEYLKRTTHGRK 241
           ++ VKVARR  S       LEYL+R   G+K
Sbjct: 711 SMHVKVARRLHSNNLRYWLLEYLRRQPKGKK 741


>11_01_0548 + 4322875-4323213
          Length = 112

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 464 SSSCTDTGCVFRSSDINL 411
           +SSC DTGC  R  D+ L
Sbjct: 57  ASSCYDTGCAIRCRDLGL 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,367,092
Number of Sequences: 37544
Number of extensions: 245067
Number of successful extensions: 621
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)