Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF497830-1|AAM18108.1|  533|Caenorhabditis elegans putative Na-H...    29   1.5  
AF098995-2|AAC67478.2|  538|Caenorhabditis elegans Na/h exchange...    29   1.5  
AF098995-1|AAR30204.1|  634|Caenorhabditis elegans Na/h exchange...    29   1.5  
AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical...    28   4.7  
Z66511-6|CAA91318.1|  343|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF497830-1|AAM18108.1|  533|Caenorhabditis elegans putative Na-H
           exchanger isoform 6 protein.
          Length = 533

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 108 LFQFIRDLXA-YRRADVTTIYNCCTVLLGGYRCFL 7
           LF F+  L   Y RA+  +I NC  +L+  Y C+L
Sbjct: 262 LFAFLASLLTKYSRAEEISILNCVFILILPYTCYL 296


>AF098995-2|AAC67478.2|  538|Caenorhabditis elegans Na/h exchanger
           protein 6, isoform a protein.
          Length = 538

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 108 LFQFIRDLXA-YRRADVTTIYNCCTVLLGGYRCFL 7
           LF F+  L   Y RA+  +I NC  +L+  Y C+L
Sbjct: 262 LFAFLASLLTKYSRAEEISILNCVFILILPYTCYL 296


>AF098995-1|AAR30204.1|  634|Caenorhabditis elegans Na/h exchanger
           protein 6, isoform b protein.
          Length = 634

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 108 LFQFIRDLXA-YRRADVTTIYNCCTVLLGGYRCFL 7
           LF F+  L   Y RA+  +I NC  +L+  Y C+L
Sbjct: 262 LFAFLASLLTKYSRAEEISILNCVFILILPYTCYL 296


>AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17c protein.
          Length = 842

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 179 RSAEQP*RSGHDTPILDSPHKLSACSSLYETXPLTA 72
           R  E+  +SG   P    P  L++CSS Y + P T+
Sbjct: 55  RDEEKAEKSGDKDPPRQFPSLLTSCSSFYSSSPSTS 90


>Z66511-6|CAA91318.1|  343|Caenorhabditis elegans Hypothetical
           protein F07A11.5 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 322 LITKGIDDVMQXAAFKLAIVLRHTPTED--CAKLMSELLNTHPVS 450
           L +KG+DDV   A  K+  V   T   D  C  L + L+  HP+S
Sbjct: 262 LASKGVDDVEHTAVIKVDAV-DTTGAGDCFCGSLAAHLVAGHPIS 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,955,974
Number of Sequences: 27780
Number of extensions: 198688
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)