Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A08f
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    26   1.5  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   2.0  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    25   2.6  

>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 264 PSPDHH-EHVHESHGWDRSDNNEAS 335
           P P HH EH    H W+ S ++++S
Sbjct: 50  PPPRHHKEHKKSHHHWEYSSDDDSS 74


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 261 NPSPDHHEHVHESHGWDRSDNNEASCRIRY 350
           +P P    H  E HG DR + N ++ R RY
Sbjct: 489 SPYPKSSHHFDERHGGDRHEKNLSNSR-RY 517


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 273 DHHEHVHESHGWDRSDNNEAS 335
           DHH H H SH    + ++EA+
Sbjct: 28  DHHGHDHHSHDSSSNSSSEAA 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,001,299
Number of Sequences: 5004
Number of extensions: 11888
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)