Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A08f
         (352 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811           31   0.34 
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708     27   4.1  
10_07_0149 - 13417794-13417956,13418079-13418252,13418423-134186...    27   5.5  
04_04_1668 + 35217254-35218531                                         27   5.5  

>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
          Length = 359

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 276 HHEHVHESHGWDRSD 320
           HHEH HE+H WD  +
Sbjct: 309 HHEHEHENHQWDEEE 323


>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
          Length = 2033

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 279 HEHVHESHGWDRSDNNEASCRIRY 350
           H+ V   H W+R   +EAS R+ Y
Sbjct: 485 HQSVPPKHPWNRFGRSEASLRVAY 508


>10_07_0149 -
           13417794-13417956,13418079-13418252,13418423-13418610,
           13418698-13418775,13418889-13418993,13419613-13419915
          Length = 336

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 300 HGWDRSDNNEASCRIRY 350
           H WDRS+N   +C   Y
Sbjct: 266 HNWDRSENERTACFFEY 282


>04_04_1668 + 35217254-35218531
          Length = 425

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 264 PSPDHHEHVHESH 302
           P PDHH H H  H
Sbjct: 31  PPPDHHSHSHTQH 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,245,916
Number of Sequences: 37544
Number of extensions: 76250
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)