Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    36   0.004
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    25   9.0  

>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -3

Query: 519 ILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQSKLCSFCVFTDISY 379
           + GPSHH+    C +S      TPL DL +D+   LC   V +D S+
Sbjct: 73  VFGPSHHIFTRKCLVSRASICSTPLGDLKVDED--LCQKLVASDNSF 117


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 224 LTVFMRKILISNDSAC*LDFEYFRKLYTFNAASRYHTKRNMLMIIYAY 367
           L  F ++I  SN+     +    ++L TFN ++    KRN L+ I+ Y
Sbjct: 496 LCAFTQEIEFSNEK----EKSPIQQLLTFNNSNMIVAKRNQLLDIFIY 539


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 456 QTPLYDLTIDKQSKLCSFCVFTDISYAIFQ 367
           +TPL+  T DK + LC+ C   +  Y + +
Sbjct: 372 ETPLWRRTSDKLNFLCNACGLYNKQYGVMR 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,083
Number of Sequences: 5004
Number of extensions: 36348
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)