Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413...    37   0.009
08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651...    37   0.011
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177...    29   2.3  

>05_03_0442 +
           14040280-14040371,14040449-14040517,14041217-14041329,
           14043110-14043209,14044508-14044682,14044768-14044881,
           14045157-14045287,14048401-14048464,14048585-14048624,
           14049002-14049225,14049634-14049876,14050145-14050313,
           14050569-14050873,14051325-14051511,14051622-14051775,
           14052145-14052207,14052300-14052396,14052500-14052589
          Length = 809

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 519 ILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQSK 415
           +LGPSHH     CAL+    Y TP+ DL +D + +
Sbjct: 59  LLGPSHHYYTPKCALTRATIYSTPIGDLPVDHEDQ 93


>08_02_0087 +
           12163706-12163757,12164877-12164961,12165039-12165107,
           12165757-12165869,12167570-12167681,12167784-12167927,
           12169222-12169396,12169482-12169595,12169734-12169775,
           12171093-12171193,12171515-12171623
          Length = 371

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 519 ILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQ 421
           +LGPSHH     CAL+    Y TP+ DL +D +
Sbjct: 74  LLGPSHHYYTPKCALTRATIYSTPIGDLPVDHE 106


>11_01_0229 -
           1771701-1774164,1774694-1774847,1774980-1775055,
           1775439-1775477,1778516-1778674,1778741-1778851,
           1779014-1779064,1779173-1779256
          Length = 1045

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 421 LFIDGEIVEGSLVLVEGRKSASCDPHVV 504
           L ++G + EG L L+E R  A C PHVV
Sbjct: 437 LCLEGRVEEG-LKLIEARWGAGCIPHVV 463


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,061,064
Number of Sequences: 37544
Number of extensions: 188622
Number of successful extensions: 373
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)