Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    26   3.0  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   5.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   6.8  

>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
 Frame = +1

Query: 196 DLRDDIKIGQDFSVVLHMKNRSTINEHQVKGTLRVDTV-----TYAGVTGDGVKRYEFDM 360
           DL + + + +    V+ +K   T+++  V      DTV        G+    +  +    
Sbjct: 320 DLLEVLGLKEKRDTVIIVKPIDTLDKAPVLSPTTYDTVFRYYYEICGIVSRQLLSFIAPF 379

Query: 361 KLKPEQKEKVQMLVTFDDYFKKLIDQASFNIA 456
              PE K++++ L    DYFKK +     N+A
Sbjct: 380 APTPESKQELEKLGNDYDYFKKNVVDLHLNLA 411


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 398 SICTFSFCSGLSFMSNSYRFTPSPV 324
           ++ ++SF  G++ M NS   TPSP+
Sbjct: 509 NVASYSFKHGMADMLNSLASTPSPL 533


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 488 SNFRSTIVTRHAMLKDA*SISFLK*SSKVTSICTFSFCSGLSFMSNSY 345
           SNF +  +  HA      S+  L  S   TS+ TF+  S  S +S SY
Sbjct: 320 SNFNNFPIANHAPSFPQSSVKKLDSSFSPTSLPTFTTNSASSGLSTSY 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,830
Number of Sequences: 5004
Number of extensions: 35800
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)