Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085...    31   0.74 
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814...    29   1.7  
01_06_1007 - 33733500-33733604,33733837-33733917,33734191-337342...    29   2.3  
09_02_0628 + 11364169-11364233,11365135-11365648                       29   3.0  
02_05_0831 - 32071280-32071403,32071528-32071706,32071786-320718...    28   4.0  
01_06_0416 - 29195666-29196946                                         28   5.2  
12_01_0327 - 2531740-2532045,2532148-2532188,2532560-2532599           27   6.9  
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631...    27   6.9  

>04_04_1331 -
           32706043-32707248,32707411-32707652,32707737-32708562,
           32708640-32708863,32708946-32709262,32709381-32709443,
           32709465-32709640,32710609-32710985,32711416-32711470,
           32711614-32711913
          Length = 1261

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 130 KSENIFARYYLNDAFNDVTFEFDLRDDIKIGQDFSV 237
           K   + A  + N  F DVTF +  R D+ I +DFS+
Sbjct: 361 KDGKLLAEVHGNIEFKDVTFSYPSRPDVMIFRDFSL 396


>01_06_0366 - 28779899-28780543,28780813-28781076,28781165-28781431,
            28781546-28781774,28781868-28781985,28782229-28782486,
            28782585-28782858,28782950-28783475,28784289-28784527,
            28784626-28784847,28784912-28784914,28785124-28785299,
            28786147-28786201,28786288-28786557
          Length = 1181

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +1

Query: 172  FNDVTFEFDLRDDIKIGQDFSVVLHMKNRSTI 267
            FN+V+F++  R D++I  DF+  LH+ ++ TI
Sbjct: 940  FNNVSFKYPSRPDVQIFSDFT--LHIPSQKTI 969


>01_06_1007 -
           33733500-33733604,33733837-33733917,33734191-33734238,
           33734364-33734549,33735148-33735678,33735823-33735864,
           33735945-33736065,33736200-33736281,33737169-33737227,
           33738492-33738564,33738694-33738913
          Length = 515

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 42  KNGKRGYHRHIQIPGTNARRENDNGKSVAQIREHLRS 152
           KNG R   RH  + G+N R     G  VA++ +HLR+
Sbjct: 335 KNGTRSQTRHGSVGGSNGRMA--KGGRVAKLVDHLRT 369


>09_02_0628 + 11364169-11364233,11365135-11365648
          Length = 192

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 371 GLSFMSNSYRFTPSPVTPAYVTVSTRNVPL 282
           G+++ SN Y + P  V    VT S  +VPL
Sbjct: 53  GMNYYSNDYIYVPEDVLRTAVTTSATSVPL 82


>02_05_0831 -
           32071280-32071403,32071528-32071706,32071786-32071893,
           32071987-32072109,32072480-32072608,32072998-32073281,
           32073783-32074094,32074208-32074340
          Length = 463

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -3

Query: 297 SQRAFDLMFIDRRTIFHMQDHTEVLSDLNVVSEIKLEGDVIEGIVQIVPSE 145
           SQ AFD M  +      M D  E L+D   V  + L+G  + GI++ VP E
Sbjct: 6   SQEAFDAMVRENMEDLGM-DADEALAD--AVDALTLQGADLSGIIKRVPGE 53


>01_06_0416 - 29195666-29196946
          Length = 426

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 249 HMQDHTEVLSD-LNVVSEIKLEGDVIEGIVQIVPSEDV 139
           H +  +EV  D +  + E+ L GDV+E +V+ VP+ D+
Sbjct: 24  HEEVGSEVAGDGVASLGEMDLYGDVLESVVERVPAADL 61


>12_01_0327 - 2531740-2532045,2532148-2532188,2532560-2532599
          Length = 128

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 309 HCVHSQRAFDLMFIDRRTIFHMQDHTEVLSDLNVVSEIKLEGDVIEGIV 163
           HC+H     +L+      +   ++H  +  D+ VV E  + GD+I G++
Sbjct: 49  HCLHVDEVVELV-----ELVDCRNHVLLSWDIGVVEEDVIGGDIIAGVI 92


>05_03_0281 +
           11560402-11560569,11561373-11561579,11562966-11563174,
           11563261-11563309,11563611-11563673,11563799-11565472
          Length = 789

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -3

Query: 348 ISLHAVSGDAGVRHCVHSQRAFDLMFIDRRTIFHMQDHTEVLSDLNVVSEIKLEGDVIE 172
           + L  V GD   +HC   +     +F+ +     M D+T+V++D N+   +  EG V E
Sbjct: 31  VRLRFVMGD---KHCCICKTECSSVFVTKA----MGDYTKVINDFNIFPPVATEGKVGE 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,228,808
Number of Sequences: 37544
Number of extensions: 221684
Number of successful extensions: 576
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)