Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-26|CAA19455.2|  431|Caenorhabditis elegans Hypothetical...    31   0.66 
AL023828-12|CAA19456.1|  492|Caenorhabditis elegans Hypothetical...    31   0.66 
U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family...    29   1.5  
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    28   3.5  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    28   3.5  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    28   3.5  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    28   3.5  

>AL023828-26|CAA19455.2|  431|Caenorhabditis elegans Hypothetical
           protein Y17G7B.10a protein.
          Length = 431

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 54  RGYHRHIQIPGTNARRENDNGKSVAQIREH--LRSVLF 161
           RGY  H+ I G  + R ND  ++V ++R+   LR+V+F
Sbjct: 393 RGYDAHLVIDGGISYRFNDGSEAVMEVRDEDTLRTVVF 430


>AL023828-12|CAA19456.1|  492|Caenorhabditis elegans Hypothetical
           protein Y17G7B.10b protein.
          Length = 492

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 54  RGYHRHIQIPGTNARRENDNGKSVAQIREH--LRSVLF 161
           RGY  H+ I G  + R ND  ++V ++R+   LR+V+F
Sbjct: 454 RGYDAHLVIDGGISYRFNDGSEAVMEVRDEDTLRTVVF 491


>U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family
           protein 9 protein.
          Length = 623

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = -1

Query: 401 TSICTFSFCSGLSFMSNSYRFTPSPVTPAYVTV------STRNVPLT 279
           T+I +    S L+F  N+Y  T SP TP   TV      S  N PLT
Sbjct: 321 TAILSIRLQSSLAFQHNTYSTTISPTTPIGSTVITVVANSENNTPLT 367


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
           protein C25D7.3 protein.
          Length = 2150

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 23  SQLKRLEEWKERISPTHTNTRNERAKRE*QWKKRCANQR 139
           S + R E W E++ P +   + ++ KRE +W +  A QR
Sbjct: 848 SWIYRTELW-EKMKPVYERLKRDKEKREKEWHEMRAAQR 885


>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
           presynaptic activity protein.
          Length = 1409

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 5   PLSGRISQLKRLEEWKERISPTHTNTRNERAKRE*QWKKRC 127
           PL+ RI Q + +   K + +PT   T N+++K +   K+ C
Sbjct: 752 PLANRIEQSQHIVRSKTQPNPTSQQTANQQSKNQQTVKEFC 792


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
           defective protein3, isoform b protein.
          Length = 1408

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 5   PLSGRISQLKRLEEWKERISPTHTNTRNERAKRE*QWKKRC 127
           PL+ RI Q + +   K + +PT   T N+++K +   K+ C
Sbjct: 752 PLANRIEQSQHIVRSKTQPNPTSQQTANQQSKNQQTVKEFC 792


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
           defective protein3, isoform a protein.
          Length = 1409

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 5   PLSGRISQLKRLEEWKERISPTHTNTRNERAKRE*QWKKRC 127
           PL+ RI Q + +   K + +PT   T N+++K +   K+ C
Sbjct: 752 PLANRIEQSQHIVRSKTQPNPTSQQTANQQSKNQQTVKEFC 792


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 2150

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 23  SQLKRLEEWKERISPTHTNTRNERAKRE*QWKKRCANQR 139
           S + R E W E++ P +   + ++ KRE +W +  A QR
Sbjct: 848 SWIYRTELW-EKMKPVYERLKRDKEKREKEWHEMRAAQR 885


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,777,569
Number of Sequences: 27780
Number of extensions: 204581
Number of successful extensions: 682
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)