Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    28   0.97 
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   1.7  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    26   3.9  

>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 9/44 (20%), Positives = 26/44 (59%)
 Frame = +2

Query: 218 ENHNRRTRIKVYSDLLNAVCNYYEN*YFISTKSTKNRRGINNKS 349
           E++ +R  +  + ++L   C++ +N Y++ T  + +   +NN++
Sbjct: 333 ESYQQRVNLSPHEEILGLCCDHEKNTYWLYTTDSLHELVVNNET 376


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 108 LIEVFILLFQIMGHYSHFYVLYKNEPYQFL 197
           L  +FI+L     HYS F+ +++   ++FL
Sbjct: 390 LYSIFIILLSSNSHYSQFWAIFQAFVWRFL 419


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 79  TYIHLQYKHI**KFSYSYFKLWAITHIFTCFTKMNLTSFC 198
           TY+ LQ +H+   F +    L A+  +++      L  FC
Sbjct: 107 TYVILQCQHVVANFKFIVIILHAMCSVYSSLANTTLEEFC 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,324
Number of Sequences: 5004
Number of extensions: 39892
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)