Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326A03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine re...    30   1.2  
AC092690-1|AAK73856.2|  427|Caenorhabditis elegans Hypothetical ...    28   4.7  

>AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine
           receptor, class v protein4 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = +2

Query: 119 FHTLISNYGPLLTFLRALQK*TLPVSV*GTLFNENHNRRTRIKVYSDLLNAVCNYYEN*Y 298
           F  L+S++  L+TF+  +Q  TLP ++  T F+ N +  + +   +DL+   C ++    
Sbjct: 191 FCFLVSSFLYLITFVHLVQ--TLPKTMSNTFFSINRSESSNLNPPTDLIIFKCAFFSFVL 248

Query: 299 FI 304
           F+
Sbjct: 249 FV 250


>AC092690-1|AAK73856.2|  427|Caenorhabditis elegans Hypothetical
           protein BE0003N10.2 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 504 FGFGLLVQ*IRCEDCGF 454
           F +GL+ Q +RCEDCGF
Sbjct: 191 FLWGLVHQGMRCEDCGF 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,898
Number of Sequences: 27780
Number of extensions: 212347
Number of successful extensions: 477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)