Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325H12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0498 - 18342517-18342960,18343164-18343397,18343569-183437...    28   4.0  
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    27   9.1  
02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122...    27   9.1  

>10_08_0498 -
           18342517-18342960,18343164-18343397,18343569-18343781,
           18344095-18344238,18344348-18344470,18345094-18345169,
           18345252-18345355,18345745-18345819,18345942-18346106,
           18346248-18346346,18346478-18346677,18346767-18346846,
           18346922-18347049,18347936-18348048,18348580-18348672,
           18349264-18349348,18350116-18350233,18350326-18350399,
           18350485-18350537,18350624-18350804,18351219-18351264,
           18351355-18351432,18351556-18351626,18351735-18351798,
           18352064-18352071
          Length = 1022

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -3

Query: 330 PTDIVHTHVDIAIIGTIALVIXXXXXXXXXXXRNVPI---GLFPSLHL 196
           P +++H HVD  I+G+IA                VP+   G +P L+L
Sbjct: 440 PPEVLHVHVDGCIVGSIASAKIEEVIPEDLEVGYVPLSHGGAYPGLYL 487


>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
            23681200-23681559,23681645-23682086,23682199-23682332,
            23682479-23682680
          Length = 2391

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 514  YRLVVTKNNIDLLNVMLFTQFACRTYGAITSLM 416
            Y ++V +     L+  LFT FA  +YG I S++
Sbjct: 1595 YAVIVQETPTSALSFALFTAFADLSYGVILSIL 1627


>02_01_0178 -
           1223725-1223736,1223900-1224025,1224404-1224649,
           1224731-1224922,1225059-1225138,1225233-1226826
          Length = 749

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 336 RYIWRGQVRFEESVTMKITYLLYKNHCISDVIAPYVRHAN 455
           RYIW G V     +   +     K  C    I  Y++H+N
Sbjct: 540 RYIWHGDVVQTSRILFYLRIFDIKKKCPYHKIVRYIQHSN 579


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,535,829
Number of Sequences: 37544
Number of extensions: 204597
Number of successful extensions: 358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)