Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325H06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    28   0.73 
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    27   1.3  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   1.7  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   3.9  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   9.0  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   9.0  

>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -2

Query: 229 RATLAGPSLVESYKTKRDSSE*TMRQCTKFTSHSLEILSKWRSART----TRRSQQNDAP 62
           R + + PS+   +   +++ E   R C K    +  IL +W +  T      R+   DA 
Sbjct: 242 RLSTSSPSITVDFSADKETDEKRERNCDKQVKAAQNILPEWHATSTISGSITRAGAKDAA 301

Query: 61  PHIRRT 44
            H  RT
Sbjct: 302 LHSFRT 307


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 344 TPVESSRTIVPHTRTRYPQMIQKKLTHQRSNISARMNTPRHACGSFPRRVLQN 186
           TP  + RT+ PH R    +  +  L  +RSN+ +   TPR       R + +N
Sbjct: 36  TPRSAQRTVTPHKRRALAR--RNSLARRRSNVFS-ATTPRDILRMLSRALAKN 85


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 304 RVCGTIVRLDSTGVR 348
           RVC TI+R+DS G+R
Sbjct: 908 RVCNTILRIDSGGIR 922


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = -3

Query: 345 NTSRVQPNYRTAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLT 190
           NT    P    +  +SISSD    +N   +       HAAP  + L   S +
Sbjct: 698 NTDCSLPKPSNSKLSSISSDGDASSNRMAVPDKSPFVHAAPNSKALTKDSFS 749


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = -3

Query: 333 VQPNYRTAYPNSISSDDSKKTNASEI--KHLGSHEHAAPRLRVLPSSSLTKLNVIRANKQ 160
           + P Y + +P  I+ +  +K N  ++  +    H H+AP    L SS       +  N  
Sbjct: 401 IVPYYSSKFPR-ITRNLLEKCNGLDLLPERSHKHRHSAPPRSKLISSKSEAGRALPGNTS 459

Query: 159 CGSVQNLHHIHSK 121
             S+ N    HS+
Sbjct: 460 GASISNTSSPHSE 472


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 234 HAAPRLRVLPSSSLTKLNVIRANKQCGSVQN 142
           H  P  R LPS+S  K N    N    S+QN
Sbjct: 398 HNPPSARRLPSASSVKFNEKLKNASKQSIQN 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,118
Number of Sequences: 5004
Number of extensions: 35497
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)