Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325H03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    31   0.10 
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    26   3.0  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.2  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.2  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    25   6.8  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    25   9.0  

>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 295 PTYD-DSLERLYQLRPNM*VSSQGSNRSGANTGPSKSSA 408
           P +D DS   L  L+ N  ++SQGSN S  N+G S SS+
Sbjct: 282 PFFDLDSKPNLSTLQDNASLTSQGSNLSSQNSGLSSSSS 320


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 370 RSGANTGPSKSSASQNLSPDRKRDPLKRSGEKLS 471
           +S  N  PS ++ S+N+S + + D ++  G+KL+
Sbjct: 136 KSEINKKPSVNNVSENISVNTEDDKVEEVGQKLN 169


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 364 SNRSGANTGPSKSSASQNLSPDRKRDP--LKRSGEKL 468
           S +SGA   PSK+S +Q+ SP+   +   ++RS  K+
Sbjct: 587 SPKSGAYASPSKASYNQDSSPNASLEQCFVQRSPSKM 623


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 204 FGEKFSGLCLP--VTSHFGSHSSTSI 275
           FG    G  LP   TS+FGS +STS+
Sbjct: 126 FGSSMLGSSLPGNATSNFGSQASTSL 151


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 206 RREIQWTVSTGYF 244
           R+E+ WT++ GYF
Sbjct: 329 RKEVNWTLTAGYF 341


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 195 VYLDSNPVVNFAKHCSC*C*FS*VKPV 115
           VY D + +     HC C   FS +KPV
Sbjct: 247 VYTDDSDIATILAHCGC---FSLLKPV 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,643
Number of Sequences: 5004
Number of extensions: 28662
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)